Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03675 and ABZR87_RS03680 are separated by 136 nucleotides ABZR87_RS03680 and ABZR87_RS03685 are separated by 198 nucleotides ABZR87_RS03685 and ABZR87_RS03690 are separated by 182 nucleotides ABZR87_RS03690 and ABZR87_RS03695 are separated by 159 nucleotides
ABZR87_RS03675: ABZR87_RS03675 - alpha/beta hydrolase, at 766,504 to 767,523
_RS03675
ABZR87_RS03680: ABZR87_RS03680 - DUF1330 domain-containing protein, at 767,660 to 767,914
_RS03680
ABZR87_RS03685: ABZR87_RS03685 - PASTA domain-containing protein, at 768,113 to 769,072
_RS03685
ABZR87_RS03690: ABZR87_RS03690 - DUF305 domain-containing protein, at 769,255 to 769,770
_RS03690
ABZR87_RS03695: ABZR87_RS03695 - carboxymuconolactone decarboxylase family protein, at 769,930 to 770,262
_RS03695
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.167 kb on + strand, within ABZR87_RS03675 at 767.230 kb on + strand, within ABZR87_RS03675 at 767.230 kb on + strand, within ABZR87_RS03675 at 767.231 kb on - strand, within ABZR87_RS03675 at 767.231 kb on - strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.263 kb on + strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.264 kb on - strand, within ABZR87_RS03675 at 767.326 kb on - strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.365 kb on + strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.366 kb on - strand, within ABZR87_RS03675 at 767.413 kb on + strand, within ABZR87_RS03675 at 767.413 kb on + strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.414 kb on - strand, within ABZR87_RS03675 at 767.521 kb on + strand at 767.521 kb on + strand at 767.521 kb on + strand at 767.522 kb on - strand at 767.573 kb on + strand at 767.573 kb on + strand at 767.573 kb on + strand at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.730 kb on + strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.731 kb on - strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 767.745 kb on + strand, within ABZR87_RS03680 at 768.001 kb on + strand at 768.001 kb on + strand at 768.001 kb on + strand at 768.001 kb on + strand at 768.002 kb on - strand at 768.002 kb on - strand at 768.002 kb on - strand at 768.013 kb on + strand at 768.013 kb on + strand at 768.014 kb on - strand at 768.014 kb on - strand at 768.022 kb on + strand at 768.023 kb on - strand at 768.058 kb on + strand at 768.058 kb on + strand at 768.059 kb on - strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.088 kb on + strand at 768.089 kb on - strand at 768.089 kb on - strand at 768.092 kb on - strand at 768.092 kb on - strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.202 kb on + strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.203 kb on - strand at 768.499 kb on - strand, within ABZR87_RS03685 at 768.499 kb on - strand, within ABZR87_RS03685 at 768.585 kb on + strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.586 kb on - strand, within ABZR87_RS03685 at 768.624 kb on - strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.818 kb on + strand, within ABZR87_RS03685 at 768.819 kb on - strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.876 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.968 kb on + strand, within ABZR87_RS03685 at 768.969 kb on - strand, within ABZR87_RS03685 at 768.969 kb on - strand, within ABZR87_RS03685 at 768.984 kb on - strand at 768.984 kb on - strand at 768.984 kb on - strand at 769.053 kb on - strand at 769.109 kb on + strand at 769.110 kb on - strand at 769.127 kb on + strand at 769.127 kb on + strand at 769.128 kb on - strand at 769.128 kb on - strand at 769.128 kb on - strand at 769.200 kb on + strand at 769.201 kb on - strand at 769.292 kb on + strand at 769.292 kb on + strand at 769.293 kb on - strand at 769.411 kb on + strand, within ABZR87_RS03690 at 769.411 kb on + strand, within ABZR87_RS03690 at 769.412 kb on - strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.425 kb on + strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.426 kb on - strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.487 kb on + strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.488 kb on - strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.592 kb on + strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.593 kb on - strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.675 kb on + strand, within ABZR87_RS03690 at 769.676 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.695 kb on - strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.706 kb on + strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.707 kb on - strand, within ABZR87_RS03690 at 769.763 kb on + strand at 769.763 kb on + strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.764 kb on - strand at 769.852 kb on + strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.853 kb on - strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.931 kb on + strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 769.932 kb on - strand at 770.034 kb on + strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695 at 770.062 kb on - strand, within ABZR87_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 767,167 + ABZR87_RS03675 0.65 -0.2 767,230 + ABZR87_RS03675 0.71 -0.2 767,230 + ABZR87_RS03675 0.71 -0.7 767,231 - ABZR87_RS03675 0.71 +0.7 767,231 - ABZR87_RS03675 0.71 -1.0 767,263 + ABZR87_RS03675 0.74 -0.8 767,263 + ABZR87_RS03675 0.74 -1.9 767,263 + ABZR87_RS03675 0.74 -1.0 767,263 + ABZR87_RS03675 0.74 -0.0 767,263 + ABZR87_RS03675 0.74 +0.1 767,264 - ABZR87_RS03675 0.75 -0.4 767,264 - ABZR87_RS03675 0.75 -1.5 767,264 - ABZR87_RS03675 0.75 -0.5 767,264 - ABZR87_RS03675 0.75 -1.2 767,264 - ABZR87_RS03675 0.75 -1.0 767,264 - ABZR87_RS03675 0.75 +0.6 767,264 - ABZR87_RS03675 0.75 -0.5 767,326 - ABZR87_RS03675 0.81 -2.1 767,365 + ABZR87_RS03675 0.84 +0.7 767,365 + ABZR87_RS03675 0.84 +1.0 767,365 + ABZR87_RS03675 0.84 -0.3 767,365 + ABZR87_RS03675 0.84 -1.5 767,365 + ABZR87_RS03675 0.84 +0.6 767,365 + ABZR87_RS03675 0.84 +0.5 767,365 + ABZR87_RS03675 0.84 -0.0 767,366 - ABZR87_RS03675 0.85 -0.2 767,366 - ABZR87_RS03675 0.85 +1.1 767,366 - ABZR87_RS03675 0.85 +0.1 767,413 + ABZR87_RS03675 0.89 +0.5 767,413 + ABZR87_RS03675 0.89 -0.3 767,414 - ABZR87_RS03675 0.89 +0.1 767,414 - ABZR87_RS03675 0.89 -2.3 767,414 - ABZR87_RS03675 0.89 +0.8 767,521 + -0.6 767,521 + -1.6 767,521 + -0.3 767,522 - +0.9 767,573 + -0.1 767,573 + -1.8 767,573 + -0.2 767,730 + ABZR87_RS03680 0.27 +0.3 767,730 + ABZR87_RS03680 0.27 -0.5 767,730 + ABZR87_RS03680 0.27 +0.5 767,730 + ABZR87_RS03680 0.27 -0.5 767,730 + ABZR87_RS03680 0.27 +0.2 767,730 + ABZR87_RS03680 0.27 +0.7 767,730 + ABZR87_RS03680 0.27 +1.2 767,731 - ABZR87_RS03680 0.28 -0.6 767,731 - ABZR87_RS03680 0.28 +0.8 767,731 - ABZR87_RS03680 0.28 +0.6 767,731 - ABZR87_RS03680 0.28 +0.4 767,731 - ABZR87_RS03680 0.28 -0.2 767,731 - ABZR87_RS03680 0.28 -1.8 767,731 - ABZR87_RS03680 0.28 +0.1 767,745 + ABZR87_RS03680 0.33 -0.5 767,745 + ABZR87_RS03680 0.33 -0.5 767,745 + ABZR87_RS03680 0.33 -0.6 768,001 + +2.3 768,001 + +0.3 768,001 + -1.1 768,001 + +0.6 768,002 - +1.1 768,002 - +1.8 768,002 - +0.4 768,013 + -0.1 768,013 + -0.1 768,014 - -0.9 768,014 - +0.3 768,022 + +0.2 768,023 - +0.8 768,058 + -2.0 768,058 + -1.8 768,059 - +0.1 768,088 + +0.5 768,088 + +0.4 768,088 + -0.4 768,088 + +0.9 768,089 - +0.6 768,089 - +0.6 768,092 - -0.3 768,092 - -0.0 768,202 + +1.3 768,202 + -2.8 768,202 + +0.5 768,202 + -0.8 768,202 + -0.7 768,203 - -0.7 768,203 - -1.2 768,203 - -0.2 768,203 - -0.8 768,203 - +0.1 768,499 - ABZR87_RS03685 0.40 +0.8 768,499 - ABZR87_RS03685 0.40 -0.1 768,585 + ABZR87_RS03685 0.49 -0.1 768,586 - ABZR87_RS03685 0.49 -0.0 768,586 - ABZR87_RS03685 0.49 +0.7 768,586 - ABZR87_RS03685 0.49 +2.5 768,586 - ABZR87_RS03685 0.49 -2.6 768,586 - ABZR87_RS03685 0.49 -0.7 768,624 - ABZR87_RS03685 0.53 +0.8 768,818 + ABZR87_RS03685 0.73 +0.9 768,818 + ABZR87_RS03685 0.73 -1.3 768,818 + ABZR87_RS03685 0.73 -0.2 768,818 + ABZR87_RS03685 0.73 -1.4 768,818 + ABZR87_RS03685 0.73 -0.4 768,818 + ABZR87_RS03685 0.73 +0.0 768,819 - ABZR87_RS03685 0.74 -1.3 768,876 + ABZR87_RS03685 0.79 -0.2 768,876 + ABZR87_RS03685 0.79 -1.5 768,876 + ABZR87_RS03685 0.79 +0.5 768,876 + ABZR87_RS03685 0.79 -0.3 768,968 + ABZR87_RS03685 0.89 +1.6 768,968 + ABZR87_RS03685 0.89 +0.1 768,968 + ABZR87_RS03685 0.89 +0.3 768,969 - ABZR87_RS03685 0.89 -0.3 768,969 - ABZR87_RS03685 0.89 +0.5 768,984 - -0.8 768,984 - -0.6 768,984 - +0.0 769,053 - +0.5 769,109 + +0.6 769,110 - -0.7 769,127 + +0.4 769,127 + -2.2 769,128 - +0.3 769,128 - -0.4 769,128 - -0.1 769,200 + -1.4 769,201 - -1.2 769,292 + -3.2 769,292 + +1.5 769,293 - +0.1 769,411 + ABZR87_RS03690 0.30 +0.3 769,411 + ABZR87_RS03690 0.30 +0.5 769,412 - ABZR87_RS03690 0.30 -0.5 769,425 + ABZR87_RS03690 0.33 -0.8 769,425 + ABZR87_RS03690 0.33 -0.4 769,425 + ABZR87_RS03690 0.33 -0.1 769,425 + ABZR87_RS03690 0.33 +0.7 769,426 - ABZR87_RS03690 0.33 -0.5 769,426 - ABZR87_RS03690 0.33 -0.3 769,487 + ABZR87_RS03690 0.45 -0.6 769,487 + ABZR87_RS03690 0.45 +0.6 769,487 + ABZR87_RS03690 0.45 -0.1 769,487 + ABZR87_RS03690 0.45 +1.3 769,487 + ABZR87_RS03690 0.45 -1.2 769,487 + ABZR87_RS03690 0.45 +0.0 769,487 + ABZR87_RS03690 0.45 +0.5 769,488 - ABZR87_RS03690 0.45 +0.7 769,488 - ABZR87_RS03690 0.45 +0.4 769,488 - ABZR87_RS03690 0.45 +0.3 769,592 + ABZR87_RS03690 0.65 +0.0 769,592 + ABZR87_RS03690 0.65 +0.2 769,592 + ABZR87_RS03690 0.65 +0.4 769,593 - ABZR87_RS03690 0.66 -0.4 769,593 - ABZR87_RS03690 0.66 +0.3 769,593 - ABZR87_RS03690 0.66 -0.3 769,593 - ABZR87_RS03690 0.66 -0.9 769,593 - ABZR87_RS03690 0.66 +2.1 769,593 - ABZR87_RS03690 0.66 -1.9 769,593 - ABZR87_RS03690 0.66 -0.3 769,675 + ABZR87_RS03690 0.81 -0.3 769,675 + ABZR87_RS03690 0.81 +1.0 769,676 - ABZR87_RS03690 0.82 +0.3 769,695 - ABZR87_RS03690 0.85 +0.3 769,695 - ABZR87_RS03690 0.85 -0.1 769,706 + ABZR87_RS03690 0.87 -0.7 769,706 + ABZR87_RS03690 0.87 +0.9 769,707 - ABZR87_RS03690 0.88 -0.5 769,707 - ABZR87_RS03690 0.88 +0.5 769,707 - ABZR87_RS03690 0.88 -0.4 769,763 + -0.8 769,763 + +0.3 769,764 - +0.0 769,764 - -0.3 769,764 - -0.1 769,764 - -0.0 769,764 - +0.7 769,764 - +0.3 769,852 + +0.1 769,853 - +0.7 769,853 - +0.8 769,853 - -0.6 769,853 - -0.8 769,931 + -0.9 769,931 + -0.4 769,931 + +0.4 769,931 + -1.6 769,931 + +0.4 769,931 + -2.3 769,931 + +1.0 769,931 + -0.6 769,931 + +0.1 769,931 + -0.2 769,931 + -0.1 769,931 + -0.4 769,931 + +0.3 769,932 - +0.6 769,932 - +0.4 769,932 - +1.0 769,932 - +0.2 769,932 - +0.4 769,932 - +2.0 769,932 - +0.7 769,932 - +1.2 770,034 + ABZR87_RS03695 0.31 -0.7 770,062 - ABZR87_RS03695 0.40 +0.3 770,062 - ABZR87_RS03695 0.40 +0.3 770,062 - ABZR87_RS03695 0.40 -0.1
Or see this region's nucleotide sequence