Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03435 and ABZR87_RS03440 are separated by 10 nucleotides ABZR87_RS03440 and ABZR87_RS03445 are separated by 17 nucleotides ABZR87_RS03445 and ABZR87_RS03450 are separated by 37 nucleotides
ABZR87_RS03435: ABZR87_RS03435 - type II secretion system protein GspL, at 716,134 to 717,570
_RS03435
ABZR87_RS03440: ABZR87_RS03440 - type II secretion system protein GspM, at 717,581 to 718,150
_RS03440
ABZR87_RS03445: ABZR87_RS03445 - type II secretion system protein N, at 718,168 to 719,010
_RS03445
ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465
_RS03450
Position (kb) 717
718
719 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.837 kb on + strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 716.838 kb on - strand, within ABZR87_RS03435 at 717.407 kb on - strand, within ABZR87_RS03435 at 717.533 kb on + strand at 717.569 kb on - strand at 717.569 kb on - strand at 717.749 kb on + strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.817 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.300 kb on + strand, within ABZR87_RS03445 at 718.301 kb on - strand, within ABZR87_RS03445 at 718.400 kb on + strand, within ABZR87_RS03445 at 718.401 kb on - strand, within ABZR87_RS03445 at 718.713 kb on + strand, within ABZR87_RS03445 at 718.714 kb on - strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 716,837 + ABZR87_RS03435 0.49 -3.8 716,837 + ABZR87_RS03435 0.49 -2.1 716,838 - ABZR87_RS03435 0.49 -0.4 716,838 - ABZR87_RS03435 0.49 -3.4 716,838 - ABZR87_RS03435 0.49 -3.2 717,407 - ABZR87_RS03435 0.89 -0.7 717,533 + +0.2 717,569 - +0.8 717,569 - -2.0 717,749 + ABZR87_RS03440 0.29 -0.6 717,750 - ABZR87_RS03440 0.30 -2.6 717,750 - ABZR87_RS03440 0.30 -4.2 717,750 - ABZR87_RS03440 0.30 -3.1 717,817 + ABZR87_RS03440 0.41 -2.7 718,082 + ABZR87_RS03440 0.88 -3.0 718,082 + ABZR87_RS03440 0.88 -2.2 718,082 + ABZR87_RS03440 0.88 -3.2 718,083 - ABZR87_RS03440 0.88 -1.6 718,083 - ABZR87_RS03440 0.88 -3.3 718,083 - ABZR87_RS03440 0.88 -2.9 718,083 - ABZR87_RS03440 0.88 -3.8 718,083 - ABZR87_RS03440 0.88 -2.4 718,083 - ABZR87_RS03440 0.88 -3.0 718,300 + ABZR87_RS03445 0.16 -3.4 718,301 - ABZR87_RS03445 0.16 +0.3 718,400 + ABZR87_RS03445 0.28 -1.1 718,401 - ABZR87_RS03445 0.28 -3.3 718,713 + ABZR87_RS03445 0.65 +0.0 718,714 - ABZR87_RS03445 0.65 -0.6 718,751 + ABZR87_RS03445 0.69 -0.6 718,751 + ABZR87_RS03445 0.69 -2.7 718,751 + ABZR87_RS03445 0.69 -1.4 718,751 + ABZR87_RS03445 0.69 -3.3 718,751 + ABZR87_RS03445 0.69 -3.0 718,751 + ABZR87_RS03445 0.69 -2.3 718,752 - ABZR87_RS03445 0.69 -0.2 718,752 - ABZR87_RS03445 0.69 -0.4 718,752 - ABZR87_RS03445 0.69 -1.5 718,789 + ABZR87_RS03445 0.74 -2.5 718,789 + ABZR87_RS03445 0.74 -1.6 718,790 - ABZR87_RS03445 0.74 -0.8 718,790 - ABZR87_RS03445 0.74 -0.7 719,063 + -0.2 719,063 + -0.1 719,063 + -0.9 719,063 + -1.3 719,063 + -1.7 719,063 + -1.8 719,063 + -1.4 719,063 + -2.2 719,064 - -0.6 719,064 - -2.4 719,064 - -1.6 719,064 - -2.9 719,064 - -3.2 719,064 - -0.0 719,064 - -1.7 719,064 - -3.1 719,064 - -0.7
Or see this region's nucleotide sequence