Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03230

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03220 and ABZR87_RS03225 overlap by 4 nucleotidesABZR87_RS03225 and ABZR87_RS03230 are separated by 91 nucleotidesABZR87_RS03230 and ABZR87_RS03235 are separated by 86 nucleotides ABZR87_RS03220: ABZR87_RS03220 - alpha/beta hydrolase, at 679,633 to 680,655 _RS03220 ABZR87_RS03225: ABZR87_RS03225 - metal-dependent hydrolase, at 680,652 to 681,548 _RS03225 ABZR87_RS03230: ABZR87_RS03230 - MerR family transcriptional regulator, at 681,640 to 682,458 _RS03230 ABZR87_RS03235: ABZR87_RS03235 - hypothetical protein, at 682,545 to 683,702 _RS03235 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.805 kb on + strand, within ABZR87_RS03225at 680.805 kb on + strand, within ABZR87_RS03225at 680.805 kb on + strand, within ABZR87_RS03225at 680.806 kb on - strand, within ABZR87_RS03225at 680.855 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.896 kb on - strand, within ABZR87_RS03225at 680.896 kb on - strand, within ABZR87_RS03225at 680.949 kb on - strand, within ABZR87_RS03225at 680.979 kb on + strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.028 kb on - strand, within ABZR87_RS03225at 681.028 kb on - strand, within ABZR87_RS03225at 681.154 kb on - strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.195 kb on + strand, within ABZR87_RS03225at 681.196 kb on - strand, within ABZR87_RS03225at 681.234 kb on - strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.471 kb on + strandat 681.471 kb on + strandat 681.471 kb on + strandat 681.471 kb on + strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.598 kb on - strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.605 kb on + strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.642 kb on - strandat 681.642 kb on - strandat 681.719 kb on + strandat 681.720 kb on - strandat 681.848 kb on + strand, within ABZR87_RS03230at 681.848 kb on + strand, within ABZR87_RS03230at 681.848 kb on + strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.903 kb on + strand, within ABZR87_RS03230at 681.903 kb on + strand, within ABZR87_RS03230at 681.904 kb on - strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.109 kb on + strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.229 kb on + strand, within ABZR87_RS03230at 682.230 kb on - strand, within ABZR87_RS03230at 682.230 kb on - strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.340 kb on + strand, within ABZR87_RS03230at 682.341 kb on - strand, within ABZR87_RS03230at 682.471 kb on - strandat 682.575 kb on - strandat 682.791 kb on + strand, within ABZR87_RS03235at 682.792 kb on - strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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680,805 + ABZR87_RS03225 0.17 +0.0
680,805 + ABZR87_RS03225 0.17 +1.1
680,805 + ABZR87_RS03225 0.17 -0.9
680,806 - ABZR87_RS03225 0.17 -0.3
680,855 + ABZR87_RS03225 0.23 -0.0
680,895 + ABZR87_RS03225 0.27 +0.6
680,895 + ABZR87_RS03225 0.27 +0.3
680,895 + ABZR87_RS03225 0.27 -1.0
680,895 + ABZR87_RS03225 0.27 -1.0
680,895 + ABZR87_RS03225 0.27 +0.2
680,895 + ABZR87_RS03225 0.27 +0.0
680,895 + ABZR87_RS03225 0.27 +0.3
680,896 - ABZR87_RS03225 0.27 -0.2
680,896 - ABZR87_RS03225 0.27 -0.5
680,949 - ABZR87_RS03225 0.33 +1.0
680,979 + ABZR87_RS03225 0.36 -0.5
680,980 - ABZR87_RS03225 0.37 -1.2
680,980 - ABZR87_RS03225 0.37 +0.2
680,980 - ABZR87_RS03225 0.37 +0.0
680,980 - ABZR87_RS03225 0.37 -0.8
681,027 + ABZR87_RS03225 0.42 -0.1
681,027 + ABZR87_RS03225 0.42 -0.3
681,027 + ABZR87_RS03225 0.42 -1.0
681,028 - ABZR87_RS03225 0.42 +0.7
681,028 - ABZR87_RS03225 0.42 +0.9
681,154 - ABZR87_RS03225 0.56 -0.3
681,160 + ABZR87_RS03225 0.57 +0.5
681,160 + ABZR87_RS03225 0.57 -0.1
681,160 + ABZR87_RS03225 0.57 -1.1
681,160 + ABZR87_RS03225 0.57 -1.0
681,160 + ABZR87_RS03225 0.57 +1.5
681,160 + ABZR87_RS03225 0.57 +0.2
681,161 - ABZR87_RS03225 0.57 -0.0
681,161 - ABZR87_RS03225 0.57 +0.1
681,161 - ABZR87_RS03225 0.57 +0.7
681,161 - ABZR87_RS03225 0.57 +0.2
681,161 - ABZR87_RS03225 0.57 +1.9
681,161 - ABZR87_RS03225 0.57 -0.5
681,161 - ABZR87_RS03225 0.57 +0.2
681,161 - ABZR87_RS03225 0.57 -1.2
681,161 - ABZR87_RS03225 0.57 -1.1
681,161 - ABZR87_RS03225 0.57 +0.0
681,161 - ABZR87_RS03225 0.57 +0.1
681,195 + ABZR87_RS03225 0.61 +0.6
681,196 - ABZR87_RS03225 0.61 +0.7
681,234 - ABZR87_RS03225 0.65 -0.4
681,255 + ABZR87_RS03225 0.67 +0.1
681,255 + ABZR87_RS03225 0.67 -0.3
681,255 + ABZR87_RS03225 0.67 +0.9
681,255 + ABZR87_RS03225 0.67 -0.1
681,255 + ABZR87_RS03225 0.67 +0.6
681,255 + ABZR87_RS03225 0.67 -0.8
681,256 - ABZR87_RS03225 0.67 -0.7
681,256 - ABZR87_RS03225 0.67 +0.4
681,256 - ABZR87_RS03225 0.67 -0.5
681,471 + -0.0
681,471 + -1.0
681,471 + -0.1
681,471 + -0.5
681,472 - +0.2
681,472 - +0.2
681,472 - -1.4
681,472 - -0.0
681,598 - -0.8
681,601 + +0.5
681,601 + +0.2
681,601 + -0.2
681,601 + +0.4
681,601 + -0.2
681,602 - -0.5
681,602 - -0.3
681,602 - +0.3
681,602 - -0.5
681,602 - +0.3
681,602 - +0.7
681,602 - -0.4
681,602 - -1.4
681,605 + +0.3
681,606 - -0.6
681,606 - +0.1
681,606 - +0.2
681,642 - +0.1
681,642 - +0.3
681,719 + +1.1
681,720 - -1.0
681,848 + ABZR87_RS03230 0.25 +0.5
681,848 + ABZR87_RS03230 0.25 +1.0
681,848 + ABZR87_RS03230 0.25 +0.7
681,849 - ABZR87_RS03230 0.26 -0.3
681,849 - ABZR87_RS03230 0.26 +0.5
681,849 - ABZR87_RS03230 0.26 +1.1
681,903 + ABZR87_RS03230 0.32 -0.3
681,903 + ABZR87_RS03230 0.32 -0.2
681,904 - ABZR87_RS03230 0.32 +0.6
682,007 + ABZR87_RS03230 0.45 +1.9
682,007 + ABZR87_RS03230 0.45 +0.9
682,007 + ABZR87_RS03230 0.45 +0.2
682,109 + ABZR87_RS03230 0.57 +0.6
682,110 - ABZR87_RS03230 0.57 -0.5
682,110 - ABZR87_RS03230 0.57 +0.1
682,110 - ABZR87_RS03230 0.57 -0.4
682,229 + ABZR87_RS03230 0.72 -0.1
682,230 - ABZR87_RS03230 0.72 -0.2
682,230 - ABZR87_RS03230 0.72 -0.3
682,286 + ABZR87_RS03230 0.79 +0.4
682,286 + ABZR87_RS03230 0.79 -0.9
682,286 + ABZR87_RS03230 0.79 +1.1
682,286 + ABZR87_RS03230 0.79 +0.0
682,286 + ABZR87_RS03230 0.79 +1.2
682,286 + ABZR87_RS03230 0.79 +1.1
682,286 + ABZR87_RS03230 0.79 +0.1
682,287 - ABZR87_RS03230 0.79 +1.0
682,287 - ABZR87_RS03230 0.79 +1.0
682,287 - ABZR87_RS03230 0.79 -0.6
682,287 - ABZR87_RS03230 0.79 +0.1
682,287 - ABZR87_RS03230 0.79 +1.4
682,287 - ABZR87_RS03230 0.79 +1.2
682,340 + ABZR87_RS03230 0.85 +0.6
682,341 - ABZR87_RS03230 0.86 -1.0
682,471 - -2.5
682,575 - +0.2
682,791 + ABZR87_RS03235 0.21 -0.0
682,792 - ABZR87_RS03235 0.21 -0.6
683,421 + ABZR87_RS03235 0.76 +0.4
683,421 + ABZR87_RS03235 0.76 -1.3
683,421 + ABZR87_RS03235 0.76 +0.1
683,421 + ABZR87_RS03235 0.76 +2.1
683,422 - ABZR87_RS03235 0.76 -0.6
683,422 - ABZR87_RS03235 0.76 -0.7
683,422 - ABZR87_RS03235 0.76 +0.6
683,422 - ABZR87_RS03235 0.76 -0.2
683,422 - ABZR87_RS03235 0.76 -1.0
683,422 - ABZR87_RS03235 0.76 +0.5

Or see this region's nucleotide sequence