Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03060

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03055 and ABZR87_RS03060 are separated by 68 nucleotidesABZR87_RS03060 and ABZR87_RS03065 are separated by 191 nucleotides ABZR87_RS03055: ABZR87_RS03055 - glycerol kinase GlpK, at 641,072 to 642,568 _RS03055 ABZR87_RS03060: ABZR87_RS03060 - hypothetical protein, at 642,637 to 643,002 _RS03060 ABZR87_RS03065: ABZR87_RS03065 - DUF1415 family protein, at 643,194 to 643,820 _RS03065 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.855 kb on + strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.856 kb on - strand, within ABZR87_RS03055at 641.961 kb on - strand, within ABZR87_RS03055at 641.961 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.396 kb on - strand, within ABZR87_RS03055at 642.422 kb on + strandat 642.423 kb on - strandat 642.423 kb on - strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.638 kb on + strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.639 kb on - strandat 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.764 kb on + strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.765 kb on - strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.797 kb on + strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 642.798 kb on - strand, within ABZR87_RS03060at 643.020 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.049 kb on - strandat 643.049 kb on - strandat 643.049 kb on - strandat 643.160 kb on + strandat 643.160 kb on + strandat 643.189 kb on - strandat 643.372 kb on - strand, within ABZR87_RS03065at 643.540 kb on + strand, within ABZR87_RS03065at 643.541 kb on - strand, within ABZR87_RS03065at 643.558 kb on - strand, within ABZR87_RS03065at 643.619 kb on + strand, within ABZR87_RS03065at 643.620 kb on - strand, within ABZR87_RS03065at 643.728 kb on + strand, within ABZR87_RS03065at 643.728 kb on + strand, within ABZR87_RS03065at 643.728 kb on + strand, within ABZR87_RS03065at 643.728 kb on + strand, within ABZR87_RS03065at 643.729 kb on - strand, within ABZR87_RS03065at 643.729 kb on - strand, within ABZR87_RS03065at 643.729 kb on - strand, within ABZR87_RS03065at 643.740 kb on - strand, within ABZR87_RS03065at 643.804 kb on + strandat 643.804 kb on + strandat 643.804 kb on + strandat 643.804 kb on + strandat 643.805 kb on - strandat 643.819 kb on - strandat 643.863 kb on - strandat 643.863 kb on - strandat 643.863 kb on - strandat 643.863 kb on - strandat 643.863 kb on - strandat 643.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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641,855 + ABZR87_RS03055 0.52 -3.3
641,855 + ABZR87_RS03055 0.52 +1.5
641,855 + ABZR87_RS03055 0.52 +0.7
641,855 + ABZR87_RS03055 0.52 -0.7
641,856 - ABZR87_RS03055 0.52 +0.0
641,856 - ABZR87_RS03055 0.52 -0.7
641,856 - ABZR87_RS03055 0.52 -0.5
641,856 - ABZR87_RS03055 0.52 -0.9
641,856 - ABZR87_RS03055 0.52 -1.5
641,961 - ABZR87_RS03055 0.59 -0.3
641,961 - ABZR87_RS03055 0.59 -2.8
642,396 - ABZR87_RS03055 0.88 -0.2
642,396 - ABZR87_RS03055 0.88 -1.2
642,396 - ABZR87_RS03055 0.88 +0.2
642,422 + -0.8
642,423 - -2.4
642,423 - -0.7
642,638 + +0.6
642,638 + +0.2
642,638 + +0.2
642,638 + -0.2
642,638 + +0.2
642,638 + +0.8
642,639 - +0.1
642,639 - +0.3
642,639 - +0.6
642,639 - +0.0
642,639 - +1.1
642,639 - -0.2
642,764 + ABZR87_RS03060 0.35 -0.0
642,764 + ABZR87_RS03060 0.35 +0.9
642,764 + ABZR87_RS03060 0.35 -0.3
642,764 + ABZR87_RS03060 0.35 +0.9
642,764 + ABZR87_RS03060 0.35 -0.9
642,765 - ABZR87_RS03060 0.35 -1.3
642,765 - ABZR87_RS03060 0.35 -1.0
642,765 - ABZR87_RS03060 0.35 -0.6
642,765 - ABZR87_RS03060 0.35 -0.6
642,765 - ABZR87_RS03060 0.35 +0.5
642,765 - ABZR87_RS03060 0.35 -0.4
642,797 + ABZR87_RS03060 0.44 +0.4
642,797 + ABZR87_RS03060 0.44 +0.4
642,797 + ABZR87_RS03060 0.44 -0.5
642,797 + ABZR87_RS03060 0.44 -0.1
642,798 - ABZR87_RS03060 0.44 -0.4
642,798 - ABZR87_RS03060 0.44 -0.8
642,798 - ABZR87_RS03060 0.44 -0.8
643,020 + -0.3
643,048 + -0.6
643,048 + +0.7
643,048 + -0.6
643,049 - -1.3
643,049 - +0.7
643,049 - -1.4
643,160 + +0.4
643,160 + -0.7
643,189 - -1.0
643,372 - ABZR87_RS03065 0.28 +0.9
643,540 + ABZR87_RS03065 0.55 +0.2
643,541 - ABZR87_RS03065 0.55 +0.0
643,558 - ABZR87_RS03065 0.58 -0.8
643,619 + ABZR87_RS03065 0.68 -0.0
643,620 - ABZR87_RS03065 0.68 -0.0
643,728 + ABZR87_RS03065 0.85 -0.9
643,728 + ABZR87_RS03065 0.85 -0.7
643,728 + ABZR87_RS03065 0.85 -1.0
643,728 + ABZR87_RS03065 0.85 -0.7
643,729 - ABZR87_RS03065 0.85 -0.1
643,729 - ABZR87_RS03065 0.85 +0.3
643,729 - ABZR87_RS03065 0.85 -0.0
643,740 - ABZR87_RS03065 0.87 +0.9
643,804 + +0.3
643,804 + -1.0
643,804 + -1.2
643,804 + +0.6
643,805 - -0.6
643,819 - -0.4
643,863 - +2.6
643,863 - -0.3
643,863 - -1.5
643,863 - +0.3
643,863 - -0.1
643,863 - -0.2

Or see this region's nucleotide sequence