Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02600

Experiment: no_plant_soil sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02590 and ABZR87_RS02595 overlap by 4 nucleotidesABZR87_RS02595 and ABZR87_RS02600 are separated by 138 nucleotidesABZR87_RS02600 and ABZR87_RS02605 are separated by 2 nucleotidesABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotides ABZR87_RS02590: ABZR87_RS02590 - 3-dehydroquinate synthase, at 550,794 to 551,900 _RS02590 ABZR87_RS02595: ABZR87_RS02595 - shikimate kinase, at 551,897 to 552,469 _RS02595 ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.852 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.169 kb on - strand, within ABZR87_RS02595at 552.503 kb on + strandat 552.503 kb on + strandat 552.504 kb on - strandat 552.504 kb on - strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.772 kb on + strandat 552.773 kb on - strandat 552.773 kb on - strandat 552.862 kb on + strand, within ABZR87_RS02600at 552.863 kb on - strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.996 kb on + strand, within ABZR87_RS02600at 553.009 kb on + strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.064 kb on + strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.450 kb on + strand, within ABZR87_RS02600at 553.451 kb on - strand, within ABZR87_RS02600at 553.456 kb on + strand, within ABZR87_RS02600at 553.457 kb on - strand, within ABZR87_RS02600at 553.502 kb on - strand, within ABZR87_RS02600at 553.578 kb on + strand, within ABZR87_RS02600at 553.578 kb on + strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.601 kb on - strand, within ABZR87_RS02600at 553.977 kb on + strand, within ABZR87_RS02600at 553.978 kb on - strand, within ABZR87_RS02600at 553.986 kb on + strand, within ABZR87_RS02600at 554.085 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.402 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.900 kb on + strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.006 kb on - strand, within ABZR87_RS02605at 555.116 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.165 kb on + strand, within ABZR87_RS02605at 555.166 kb on - strand, within ABZR87_RS02605at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.730 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB
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551,755 + ABZR87_RS02590 0.87 -3.6
551,755 + ABZR87_RS02590 0.87 -4.8
551,755 + ABZR87_RS02590 0.87 -2.6
551,755 + ABZR87_RS02590 0.87 +0.3
551,755 + ABZR87_RS02590 0.87 -2.2
551,755 + ABZR87_RS02590 0.87 -3.6
551,755 + ABZR87_RS02590 0.87 -3.2
551,756 - ABZR87_RS02590 0.87 -4.4
551,756 - ABZR87_RS02590 0.87 -2.7
551,756 - ABZR87_RS02590 0.87 -2.0
551,756 - ABZR87_RS02590 0.87 -3.7
551,756 - ABZR87_RS02590 0.87 -2.0
551,756 - ABZR87_RS02590 0.87 -3.2
551,756 - ABZR87_RS02590 0.87 -3.5
551,852 + -1.7
551,894 + -2.2
551,894 + -2.5
551,894 + -0.8
551,895 - +0.0
551,895 - -3.6
551,895 - -3.2
551,983 + ABZR87_RS02595 0.15 -0.3
551,983 + ABZR87_RS02595 0.15 -1.1
551,983 + ABZR87_RS02595 0.15 -3.8
551,984 - ABZR87_RS02595 0.15 +0.3
551,984 - ABZR87_RS02595 0.15 -6.4
551,984 - ABZR87_RS02595 0.15 -4.7
551,984 - ABZR87_RS02595 0.15 -3.7
551,986 + ABZR87_RS02595 0.16 -3.5
551,986 + ABZR87_RS02595 0.16 -1.9
551,986 + ABZR87_RS02595 0.16 -3.0
551,986 + ABZR87_RS02595 0.16 -4.9
551,986 + ABZR87_RS02595 0.16 -4.0
551,986 + ABZR87_RS02595 0.16 -3.2
551,987 - ABZR87_RS02595 0.16 -4.7
551,987 - ABZR87_RS02595 0.16 -3.3
551,987 - ABZR87_RS02595 0.16 -4.1
551,987 - ABZR87_RS02595 0.16 -4.3
551,987 - ABZR87_RS02595 0.16 -2.7
551,987 - ABZR87_RS02595 0.16 -0.2
552,045 + ABZR87_RS02595 0.26 -3.4
552,045 + ABZR87_RS02595 0.26 -2.6
552,045 + ABZR87_RS02595 0.26 -2.8
552,142 - ABZR87_RS02595 0.43 -3.6
552,142 - ABZR87_RS02595 0.43 -3.0
552,142 - ABZR87_RS02595 0.43 -4.1
552,142 - ABZR87_RS02595 0.43 -4.0
552,142 - ABZR87_RS02595 0.43 -0.4
552,168 + ABZR87_RS02595 0.47 -4.1
552,168 + ABZR87_RS02595 0.47 -6.1
552,168 + ABZR87_RS02595 0.47 -3.5
552,168 + ABZR87_RS02595 0.47 -3.3
552,168 + ABZR87_RS02595 0.47 -3.9
552,169 - ABZR87_RS02595 0.47 -4.9
552,503 + -0.3
552,503 + -1.6
552,504 - +1.2
552,504 - +0.8
552,768 + +0.5
552,768 + -0.8
552,768 + -0.3
552,769 - -0.3
552,769 - +1.3
552,769 - -0.8
552,772 + +1.1
552,773 - -1.1
552,773 - +0.3
552,862 + ABZR87_RS02600 0.12 -2.2
552,863 - ABZR87_RS02600 0.12 -0.1
552,866 + ABZR87_RS02600 0.12 -0.6
552,866 + ABZR87_RS02600 0.12 +0.8
552,866 + ABZR87_RS02600 0.12 +1.0
552,866 + ABZR87_RS02600 0.12 +2.6
552,866 + ABZR87_RS02600 0.12 +0.5
552,866 + ABZR87_RS02600 0.12 +0.2
552,866 + ABZR87_RS02600 0.12 +0.9
552,866 + ABZR87_RS02600 0.12 +0.9
552,866 + ABZR87_RS02600 0.12 -0.3
552,866 + ABZR87_RS02600 0.12 +0.2
552,867 - ABZR87_RS02600 0.12 -0.3
552,867 - ABZR87_RS02600 0.12 +0.6
552,867 - ABZR87_RS02600 0.12 -0.8
552,867 - ABZR87_RS02600 0.12 -0.6
552,867 - ABZR87_RS02600 0.12 -0.0
552,867 - ABZR87_RS02600 0.12 +1.0
552,867 - ABZR87_RS02600 0.12 +1.2
552,867 - ABZR87_RS02600 0.12 +0.2
552,867 - ABZR87_RS02600 0.12 +1.1
552,996 + ABZR87_RS02600 0.18 -0.7
553,009 + ABZR87_RS02600 0.19 +1.0
553,010 - ABZR87_RS02600 0.19 -0.2
553,010 - ABZR87_RS02600 0.19 +0.0
553,064 + ABZR87_RS02600 0.21 -0.5
553,065 - ABZR87_RS02600 0.21 -0.3
553,065 - ABZR87_RS02600 0.21 -0.4
553,065 - ABZR87_RS02600 0.21 -1.4
553,254 + ABZR87_RS02600 0.30 +1.0
553,254 + ABZR87_RS02600 0.30 +0.6
553,254 + ABZR87_RS02600 0.30 -0.1
553,254 + ABZR87_RS02600 0.30 -0.4
553,254 - ABZR87_RS02600 0.30 -0.1
553,255 - ABZR87_RS02600 0.30 +0.4
553,255 - ABZR87_RS02600 0.30 +0.4
553,258 + ABZR87_RS02600 0.30 -0.7
553,258 + ABZR87_RS02600 0.30 +0.3
553,259 - ABZR87_RS02600 0.30 -0.6
553,259 - ABZR87_RS02600 0.30 -0.6
553,259 - ABZR87_RS02600 0.30 -1.2
553,259 - ABZR87_RS02600 0.30 -0.2
553,259 - ABZR87_RS02600 0.30 +0.4
553,450 + ABZR87_RS02600 0.39 +0.6
553,451 - ABZR87_RS02600 0.39 +0.0
553,456 + ABZR87_RS02600 0.39 +0.3
553,457 - ABZR87_RS02600 0.39 +0.0
553,502 - ABZR87_RS02600 0.41 +0.9
553,578 + ABZR87_RS02600 0.45 -0.0
553,578 + ABZR87_RS02600 0.45 +1.3
553,579 - ABZR87_RS02600 0.45 -0.1
553,579 - ABZR87_RS02600 0.45 -0.6
553,579 - ABZR87_RS02600 0.45 -2.0
553,579 - ABZR87_RS02600 0.45 +0.8
553,601 - ABZR87_RS02600 0.46 +0.2
553,977 + ABZR87_RS02600 0.63 -0.3
553,978 - ABZR87_RS02600 0.64 +0.8
553,986 + ABZR87_RS02600 0.64 -0.0
554,085 + ABZR87_RS02600 0.68 -0.2
554,337 + ABZR87_RS02600 0.80 +0.0
554,337 + ABZR87_RS02600 0.80 +1.1
554,337 + ABZR87_RS02600 0.80 +0.3
554,338 - ABZR87_RS02600 0.80 +2.3
554,338 - ABZR87_RS02600 0.80 +0.2
554,338 - ABZR87_RS02600 0.80 +0.2
554,338 - ABZR87_RS02600 0.80 -1.8
554,338 - ABZR87_RS02600 0.80 -1.2
554,364 + ABZR87_RS02600 0.81 -0.1
554,364 + ABZR87_RS02600 0.81 +1.5
554,364 + ABZR87_RS02600 0.81 +1.2
554,365 - ABZR87_RS02600 0.81 -0.6
554,365 - ABZR87_RS02600 0.81 -0.1
554,365 - ABZR87_RS02600 0.81 -1.0
554,365 - ABZR87_RS02600 0.81 +0.0
554,365 - ABZR87_RS02600 0.81 -0.1
554,365 - ABZR87_RS02600 0.81 -0.1
554,402 - ABZR87_RS02600 0.83 -1.1
554,452 - ABZR87_RS02600 0.85 +0.4
554,452 - ABZR87_RS02600 0.85 -0.2
554,452 - ABZR87_RS02600 0.85 +0.4
554,885 + ABZR87_RS02605 0.22 -1.3
554,885 + ABZR87_RS02605 0.22 -0.1
554,885 + ABZR87_RS02605 0.22 -1.3
554,886 - ABZR87_RS02605 0.22 -0.6
554,886 - ABZR87_RS02605 0.22 +0.1
554,900 + ABZR87_RS02605 0.24 +0.2
554,901 - ABZR87_RS02605 0.25 +1.4
554,901 - ABZR87_RS02605 0.25 +0.3
554,901 - ABZR87_RS02605 0.25 +0.0
554,901 - ABZR87_RS02605 0.25 -0.0
554,901 - ABZR87_RS02605 0.25 -0.2
555,005 + ABZR87_RS02605 0.44 +0.7
555,005 + ABZR87_RS02605 0.44 +0.8
555,006 - ABZR87_RS02605 0.44 -0.7
555,116 + ABZR87_RS02605 0.64 +1.1
555,131 + ABZR87_RS02605 0.67 +0.3
555,131 + ABZR87_RS02605 0.67 +0.3
555,165 + ABZR87_RS02605 0.73 +1.2
555,166 - ABZR87_RS02605 0.73 +0.2
555,544 + ABZR87_RS02610 0.36 -0.1
555,544 + ABZR87_RS02610 0.36 -1.0
555,544 + ABZR87_RS02610 0.36 +0.7
555,544 + ABZR87_RS02610 0.36 -0.1
555,545 - ABZR87_RS02610 0.36 +0.2
555,545 - ABZR87_RS02610 0.36 -0.4
555,545 - ABZR87_RS02610 0.36 -0.9
555,545 - ABZR87_RS02610 0.36 -0.4
555,545 - ABZR87_RS02610 0.36 +0.3
555,547 + ABZR87_RS02610 0.36 +1.7
555,547 + ABZR87_RS02610 0.36 +0.8
555,547 + ABZR87_RS02610 0.36 +0.7
555,547 + ABZR87_RS02610 0.36 -0.1
555,547 + ABZR87_RS02610 0.36 -0.8
555,547 + ABZR87_RS02610 0.36 +1.6
555,548 - ABZR87_RS02610 0.36 -0.6
555,548 - ABZR87_RS02610 0.36 +0.7
555,729 + ABZR87_RS02610 0.64 +0.4
555,729 + ABZR87_RS02610 0.64 +0.1
555,729 + ABZR87_RS02610 0.64 -0.1
555,730 - ABZR87_RS02610 0.64 +1.9
555,752 - ABZR87_RS02610 0.67 -0.1
555,752 - ABZR87_RS02610 0.67 -0.5

Or see this region's nucleotide sequence