Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02560 and ABZR87_RS02565 are separated by 175 nucleotides ABZR87_RS02565 and ABZR87_RS02570 are separated by 140 nucleotides
ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984
_RS02560
ABZR87_RS02565: ABZR87_RS02565 - glutamate synthase subunit beta, at 541,160 to 542,623
_RS02565
ABZR87_RS02570: ABZR87_RS02570 - glutamate synthase-related protein, at 542,764 to 547,485
_RS02570
Position (kb) 541
542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 540.317 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.838 kb on - strand, within ABZR87_RS02560 at 541.019 kb on + strand at 541.019 kb on + strand at 541.020 kb on - strand at 541.020 kb on - strand at 541.050 kb on + strand at 541.050 kb on + strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.065 kb on + strand at 541.065 kb on + strand at 541.066 kb on - strand at 541.302 kb on + strand at 541.393 kb on + strand, within ABZR87_RS02565 at 541.393 kb on + strand, within ABZR87_RS02565 at 541.393 kb on + strand, within ABZR87_RS02565 at 541.394 kb on - strand, within ABZR87_RS02565 at 541.394 kb on - strand, within ABZR87_RS02565 at 541.602 kb on + strand, within ABZR87_RS02565 at 541.602 kb on + strand, within ABZR87_RS02565 at 541.819 kb on - strand, within ABZR87_RS02565 at 541.819 kb on - strand, within ABZR87_RS02565 at 542.074 kb on - strand, within ABZR87_RS02565 at 542.409 kb on + strand, within ABZR87_RS02565 at 542.409 kb on + strand, within ABZR87_RS02565 at 542.410 kb on - strand, within ABZR87_RS02565 at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.545 kb on - strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.575 kb on - strand at 542.575 kb on - strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.707 kb on - strand at 542.707 kb on - strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.831 kb on + strand at 542.831 kb on + strand at 542.832 kb on - strand at 542.916 kb on - strand at 543.092 kb on + strand at 543.092 kb on + strand at 543.092 kb on + strand at 543.093 kb on - strand at 543.093 kb on - strand at 543.098 kb on + strand at 543.099 kb on - strand at 543.099 kb on - strand at 543.099 kb on - strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.393 kb on - strand, within ABZR87_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 540,317 + ABZR87_RS02560 0.35 +0.9 540,410 + ABZR87_RS02560 0.44 -0.1 540,410 + ABZR87_RS02560 0.44 +1.1 540,411 - ABZR87_RS02560 0.44 +0.3 540,411 - ABZR87_RS02560 0.44 +0.3 540,411 - ABZR87_RS02560 0.44 +0.1 540,608 + ABZR87_RS02560 0.63 -0.2 540,608 + ABZR87_RS02560 0.63 +0.5 540,609 - ABZR87_RS02560 0.64 +0.1 540,609 - ABZR87_RS02560 0.64 +0.5 540,666 + ABZR87_RS02560 0.69 +0.3 540,666 + ABZR87_RS02560 0.69 -1.0 540,666 + ABZR87_RS02560 0.69 -1.3 540,666 + ABZR87_RS02560 0.69 +0.2 540,666 + ABZR87_RS02560 0.69 +1.2 540,666 + ABZR87_RS02560 0.69 -0.1 540,666 + ABZR87_RS02560 0.69 -1.2 540,666 + ABZR87_RS02560 0.69 +1.2 540,666 + ABZR87_RS02560 0.69 -0.6 540,666 + ABZR87_RS02560 0.69 -0.8 540,666 + ABZR87_RS02560 0.69 -1.1 540,666 + ABZR87_RS02560 0.69 -0.2 540,666 + ABZR87_RS02560 0.69 +1.1 540,667 - ABZR87_RS02560 0.69 -0.9 540,667 - ABZR87_RS02560 0.69 -0.9 540,667 - ABZR87_RS02560 0.69 +0.7 540,667 - ABZR87_RS02560 0.69 -0.1 540,667 - ABZR87_RS02560 0.69 +0.6 540,736 + ABZR87_RS02560 0.76 +0.4 540,736 + ABZR87_RS02560 0.76 +0.1 540,736 + ABZR87_RS02560 0.76 -0.3 540,737 - ABZR87_RS02560 0.76 +0.8 540,737 - ABZR87_RS02560 0.76 +0.1 540,737 - ABZR87_RS02560 0.76 +0.5 540,837 + ABZR87_RS02560 0.86 +0.5 540,837 + ABZR87_RS02560 0.86 +0.8 540,837 + ABZR87_RS02560 0.86 +1.2 540,838 - ABZR87_RS02560 0.86 +0.2 541,019 + +2.3 541,019 + +0.8 541,020 - -1.5 541,020 - -1.1 541,050 + +0.1 541,050 + -0.5 541,051 - +0.5 541,051 - +0.3 541,051 - +0.2 541,051 - +0.1 541,065 + -0.1 541,065 + +1.3 541,066 - -0.5 541,302 + -4.7 541,393 + ABZR87_RS02565 0.16 -0.5 541,393 + ABZR87_RS02565 0.16 -3.2 541,393 + ABZR87_RS02565 0.16 -2.8 541,394 - ABZR87_RS02565 0.16 -1.9 541,394 - ABZR87_RS02565 0.16 -2.9 541,602 + ABZR87_RS02565 0.30 -3.9 541,602 + ABZR87_RS02565 0.30 -0.1 541,819 - ABZR87_RS02565 0.45 -3.2 541,819 - ABZR87_RS02565 0.45 -3.9 542,074 - ABZR87_RS02565 0.62 -2.3 542,409 + ABZR87_RS02565 0.85 -3.1 542,409 + ABZR87_RS02565 0.85 -4.3 542,410 - ABZR87_RS02565 0.85 -2.3 542,544 + -2.3 542,544 + -3.8 542,544 + -3.4 542,544 + -3.0 542,544 + -3.5 542,544 + -3.8 542,545 - -1.8 542,574 + -3.6 542,574 + -1.6 542,574 + +1.9 542,574 + +1.3 542,574 + -2.8 542,574 + -4.2 542,574 + -3.0 542,575 - -2.6 542,575 - -0.7 542,706 + +0.6 542,706 + -1.2 542,706 + -0.0 542,706 + -1.9 542,707 - -0.5 542,707 - -0.7 542,807 + -1.2 542,807 + +0.1 542,807 + -1.8 542,807 + -0.7 542,808 - -0.1 542,808 - -0.5 542,808 - -1.0 542,808 - +0.5 542,808 - -1.0 542,808 - -1.1 542,808 - -1.0 542,831 + -1.0 542,831 + -0.2 542,832 - -0.5 542,916 - +0.9 543,092 + -2.7 543,092 + -2.8 543,092 + -3.7 543,093 - -3.9 543,093 - -3.7 543,098 + -2.9 543,099 - -2.1 543,099 - -3.3 543,099 - -1.7 543,176 + -0.7 543,176 + -3.9 543,176 + -2.5 543,176 + -2.5 543,176 + +0.3 543,176 + -0.7 543,176 + -2.8 543,176 + -1.8 543,177 - -3.6 543,177 - -0.8 543,177 - -3.5 543,177 - -2.4 543,392 + ABZR87_RS02570 0.13 -3.7 543,392 + ABZR87_RS02570 0.13 -3.4 543,392 + ABZR87_RS02570 0.13 -3.9 543,392 + ABZR87_RS02570 0.13 -3.9 543,392 + ABZR87_RS02570 0.13 -0.1 543,392 + ABZR87_RS02570 0.13 -3.3 543,392 + ABZR87_RS02570 0.13 -1.2 543,392 + ABZR87_RS02570 0.13 -4.1 543,393 - ABZR87_RS02570 0.13 -3.6
Or see this region's nucleotide sequence