Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02540 and ABZR87_RS02545 are separated by 3 nucleotides ABZR87_RS02545 and ABZR87_RS02550 are separated by 37 nucleotides ABZR87_RS02550 and ABZR87_RS02555 overlap by 4 nucleotides
ABZR87_RS02540: ABZR87_RS02540 - VacJ family lipoprotein, at 536,761 to 537,564
_RS02540
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
ABZR87_RS02550: ABZR87_RS02550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 538,127 to 538,894
_RS02550
ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724
_RS02555
Position (kb) 538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.302 kb on + strand, within ABZR87_RS02540 at 537.303 kb on - strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.540 kb on + strand at 537.540 kb on + strand at 537.541 kb on - strand at 537.541 kb on - strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.547 kb on - strand at 537.570 kb on - strand at 537.570 kb on - strand at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.822 kb on - strand, within ABZR87_RS02545 at 537.822 kb on - strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.971 kb on + strand, within ABZR87_RS02545 at 537.972 kb on - strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.042 kb on + strand at 538.043 kb on - strand at 538.083 kb on + strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.242 kb on + strand, within ABZR87_RS02550 at 538.242 kb on + strand, within ABZR87_RS02550 at 538.243 kb on - strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.408 kb on + strand, within ABZR87_RS02550 at 538.666 kb on - strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.684 kb on - strand, within ABZR87_RS02550 at 538.949 kb on + strand at 538.950 kb on - strand at 538.950 kb on - strand at 539.069 kb on + strand, within ABZR87_RS02555 at 539.069 kb on + strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.214 kb on - strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.377 kb on - strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.670 kb on - strand at 539.764 kb on - strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.824 kb on - strand at 539.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 537,302 + ABZR87_RS02540 0.67 -0.2 537,303 - ABZR87_RS02540 0.67 -1.8 537,371 + ABZR87_RS02540 0.76 -2.3 537,371 + ABZR87_RS02540 0.76 -0.2 537,371 + ABZR87_RS02540 0.76 -0.4 537,371 + ABZR87_RS02540 0.76 -2.6 537,371 + ABZR87_RS02540 0.76 -1.0 537,372 - ABZR87_RS02540 0.76 -0.9 537,372 - ABZR87_RS02540 0.76 -1.7 537,372 - ABZR87_RS02540 0.76 -1.1 537,372 - ABZR87_RS02540 0.76 -3.6 537,372 - ABZR87_RS02540 0.76 -1.0 537,372 - ABZR87_RS02540 0.76 -2.1 537,540 + -1.4 537,540 + -1.7 537,541 - +0.6 537,541 - -1.9 537,546 + -0.7 537,546 + -1.4 537,546 + +0.6 537,547 - -1.9 537,570 - +0.3 537,570 - -0.7 537,653 + ABZR87_RS02545 0.16 -1.3 537,653 + ABZR87_RS02545 0.16 -2.8 537,653 + ABZR87_RS02545 0.16 +0.9 537,653 + ABZR87_RS02545 0.16 +0.1 537,654 - ABZR87_RS02545 0.16 -1.6 537,654 - ABZR87_RS02545 0.16 -0.1 537,654 - ABZR87_RS02545 0.16 -1.1 537,761 + ABZR87_RS02545 0.37 -2.1 537,761 + ABZR87_RS02545 0.37 -2.5 537,761 + ABZR87_RS02545 0.37 -2.1 537,761 + ABZR87_RS02545 0.37 -1.9 537,761 + ABZR87_RS02545 0.37 +1.9 537,762 - ABZR87_RS02545 0.37 -1.2 537,762 - ABZR87_RS02545 0.37 -1.6 537,762 - ABZR87_RS02545 0.37 -1.6 537,762 - ABZR87_RS02545 0.37 -2.3 537,822 - ABZR87_RS02545 0.49 -1.7 537,822 - ABZR87_RS02545 0.49 -1.7 537,857 + ABZR87_RS02545 0.55 -2.0 537,857 + ABZR87_RS02545 0.55 -2.1 537,857 + ABZR87_RS02545 0.55 -2.2 537,858 - ABZR87_RS02545 0.56 -1.5 537,858 - ABZR87_RS02545 0.56 -1.0 537,858 - ABZR87_RS02545 0.56 -2.3 537,971 + ABZR87_RS02545 0.77 -1.7 537,972 - ABZR87_RS02545 0.77 -1.5 537,999 + ABZR87_RS02545 0.83 -1.9 537,999 + ABZR87_RS02545 0.83 -1.0 537,999 + ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -1.4 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -1.9 538,000 - ABZR87_RS02545 0.83 -1.3 538,000 - ABZR87_RS02545 0.83 -2.3 538,000 - ABZR87_RS02545 0.83 -2.3 538,000 - ABZR87_RS02545 0.83 -0.2 538,000 - ABZR87_RS02545 0.83 -1.6 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -1.8 538,042 + -0.8 538,043 - -1.1 538,083 + -1.4 538,084 - -2.2 538,084 - -2.2 538,084 - -1.2 538,242 + ABZR87_RS02550 0.15 -0.2 538,242 + ABZR87_RS02550 0.15 -1.2 538,243 - ABZR87_RS02550 0.15 -0.8 538,251 + ABZR87_RS02550 0.16 -0.5 538,251 + ABZR87_RS02550 0.16 -2.6 538,251 + ABZR87_RS02550 0.16 -1.0 538,252 - ABZR87_RS02550 0.16 -2.2 538,252 - ABZR87_RS02550 0.16 -1.0 538,252 - ABZR87_RS02550 0.16 -2.2 538,395 + ABZR87_RS02550 0.35 -3.3 538,395 + ABZR87_RS02550 0.35 -2.1 538,408 + ABZR87_RS02550 0.37 -2.4 538,666 - ABZR87_RS02550 0.70 -1.8 538,683 + ABZR87_RS02550 0.72 -2.4 538,683 + ABZR87_RS02550 0.72 -2.4 538,683 + ABZR87_RS02550 0.72 -2.5 538,684 - ABZR87_RS02550 0.73 -0.7 538,949 + -2.0 538,950 - +1.9 538,950 - -1.4 539,069 + ABZR87_RS02555 0.21 +0.6 539,069 + ABZR87_RS02555 0.21 -2.3 539,070 - ABZR87_RS02555 0.21 -0.7 539,070 - ABZR87_RS02555 0.21 -0.4 539,070 - ABZR87_RS02555 0.21 -2.0 539,076 - ABZR87_RS02555 0.22 -1.6 539,076 - ABZR87_RS02555 0.22 -0.7 539,076 - ABZR87_RS02555 0.22 -0.1 539,076 - ABZR87_RS02555 0.22 -2.2 539,076 - ABZR87_RS02555 0.22 -2.3 539,076 - ABZR87_RS02555 0.22 -1.0 539,076 - ABZR87_RS02555 0.22 -2.4 539,076 - ABZR87_RS02555 0.22 -1.7 539,101 + ABZR87_RS02555 0.25 +0.9 539,101 + ABZR87_RS02555 0.25 -2.1 539,101 + ABZR87_RS02555 0.25 -2.0 539,102 - ABZR87_RS02555 0.25 -1.7 539,102 - ABZR87_RS02555 0.25 -3.6 539,102 - ABZR87_RS02555 0.25 -0.8 539,213 + ABZR87_RS02555 0.39 -2.1 539,213 + ABZR87_RS02555 0.39 -1.0 539,213 + ABZR87_RS02555 0.39 -2.2 539,213 + ABZR87_RS02555 0.39 -1.3 539,214 - ABZR87_RS02555 0.39 +0.6 539,376 + ABZR87_RS02555 0.58 -1.2 539,376 + ABZR87_RS02555 0.58 -2.0 539,377 - ABZR87_RS02555 0.58 -2.5 539,474 + ABZR87_RS02555 0.70 -0.7 539,474 + ABZR87_RS02555 0.70 -1.1 539,475 - ABZR87_RS02555 0.70 -2.6 539,475 - ABZR87_RS02555 0.70 -0.9 539,475 - ABZR87_RS02555 0.70 -1.2 539,475 - ABZR87_RS02555 0.70 -1.1 539,475 - ABZR87_RS02555 0.70 -2.9 539,475 - ABZR87_RS02555 0.70 -0.2 539,670 - -1.8 539,764 - -2.0 539,821 + -0.5 539,821 + +0.6 539,821 + -0.7 539,821 + +0.1 539,821 + -2.3 539,822 - -0.6 539,822 - +0.5 539,822 - -0.6 539,822 - -0.0 539,822 - +0.6 539,823 + +0.1 539,823 + -0.5 539,823 + +0.5 539,823 + +1.3 539,823 + +1.4 539,823 + +0.8 539,823 + -1.0 539,824 - -1.7 539,862 + -0.9
Or see this region's nucleotide sequence