Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02525 and ABZR87_RS02530 are separated by 251 nucleotides ABZR87_RS02530 and ABZR87_RS02535 are separated by 74 nucleotides ABZR87_RS02535 and ABZR87_RS02540 are separated by 152 nucleotides ABZR87_RS02540 and ABZR87_RS02545 are separated by 3 nucleotides
ABZR87_RS02525: ABZR87_RS02525 - ABC transporter ATP-binding protein, at 534,370 to 535,335
_RS02525
ABZR87_RS02530: ABZR87_RS02530 - STAS domain-containing protein, at 535,587 to 535,898
_RS02530
ABZR87_RS02535: ABZR87_RS02535 - phospholipid-binding protein MlaC, at 535,973 to 536,608
_RS02535
ABZR87_RS02540: ABZR87_RS02540 - VacJ family lipoprotein, at 536,761 to 537,564
_RS02540
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 535.029 kb on - strand, within ABZR87_RS02525 at 535.029 kb on - strand, within ABZR87_RS02525 at 535.299 kb on - strand at 535.299 kb on - strand at 535.299 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.443 kb on + strand at 535.652 kb on - strand, within ABZR87_RS02530 at 535.960 kb on - strand at 535.974 kb on + strand at 535.975 kb on - strand at 535.975 kb on - strand at 535.975 kb on - strand at 536.079 kb on + strand, within ABZR87_RS02535 at 536.079 kb on + strand, within ABZR87_RS02535 at 536.080 kb on - strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.241 kb on + strand, within ABZR87_RS02535 at 536.241 kb on + strand, within ABZR87_RS02535 at 536.242 kb on - strand, within ABZR87_RS02535 at 536.242 kb on - strand, within ABZR87_RS02535 at 536.283 kb on + strand, within ABZR87_RS02535 at 536.283 kb on - strand, within ABZR87_RS02535 at 536.284 kb on - strand, within ABZR87_RS02535 at 536.284 kb on - strand, within ABZR87_RS02535 at 536.576 kb on + strand at 536.577 kb on - strand at 536.608 kb on + strand at 536.609 kb on - strand at 536.609 kb on - strand at 536.609 kb on - strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.620 kb on - strand at 536.621 kb on + strand at 536.621 kb on + strand at 536.621 kb on + strand at 536.622 kb on - strand at 536.622 kb on - strand at 536.674 kb on + strand at 536.674 kb on + strand at 536.675 kb on - strand at 536.675 kb on - strand at 536.675 kb on - strand at 536.719 kb on + strand at 536.719 kb on + strand at 536.720 kb on - strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.773 kb on + strand at 536.774 kb on - strand at 536.801 kb on + strand at 536.802 kb on - strand at 536.802 kb on - strand at 536.873 kb on + strand, within ABZR87_RS02540 at 536.873 kb on + strand, within ABZR87_RS02540 at 536.874 kb on - strand, within ABZR87_RS02540 at 536.882 kb on + strand, within ABZR87_RS02540 at 536.883 kb on - strand, within ABZR87_RS02540 at 536.900 kb on + strand, within ABZR87_RS02540 at 536.921 kb on + strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 537.008 kb on + strand, within ABZR87_RS02540 at 537.008 kb on + strand, within ABZR87_RS02540 at 537.009 kb on - strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.116 kb on + strand, within ABZR87_RS02540 at 537.116 kb on + strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.302 kb on + strand, within ABZR87_RS02540 at 537.303 kb on - strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.540 kb on + strand at 537.540 kb on + strand at 537.541 kb on - strand at 537.541 kb on - strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.547 kb on - strand at 537.570 kb on - strand at 537.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 535,029 - ABZR87_RS02525 0.68 -0.2 535,029 - ABZR87_RS02525 0.68 -0.2 535,299 - +0.7 535,299 - +0.9 535,299 - +0.5 535,442 - -0.2 535,442 - -0.7 535,442 - +0.1 535,442 - -0.5 535,442 - +0.1 535,443 + +0.5 535,652 - ABZR87_RS02530 0.21 -0.4 535,960 - +0.3 535,974 + -0.7 535,975 - -1.0 535,975 - -0.3 535,975 - -0.9 536,079 + ABZR87_RS02535 0.17 -2.0 536,079 + ABZR87_RS02535 0.17 -0.7 536,080 - ABZR87_RS02535 0.17 -2.7 536,118 + ABZR87_RS02535 0.23 -3.1 536,118 + ABZR87_RS02535 0.23 -1.3 536,118 + ABZR87_RS02535 0.23 +0.9 536,118 + ABZR87_RS02535 0.23 +0.6 536,118 + ABZR87_RS02535 0.23 -3.3 536,118 + ABZR87_RS02535 0.23 +1.3 536,119 - ABZR87_RS02535 0.23 +0.9 536,119 - ABZR87_RS02535 0.23 -1.1 536,119 - ABZR87_RS02535 0.23 -0.1 536,119 - ABZR87_RS02535 0.23 -2.8 536,119 - ABZR87_RS02535 0.23 -1.6 536,241 + ABZR87_RS02535 0.42 -2.3 536,241 + ABZR87_RS02535 0.42 -1.5 536,242 - ABZR87_RS02535 0.42 -1.1 536,242 - ABZR87_RS02535 0.42 -1.4 536,283 + ABZR87_RS02535 0.49 -1.8 536,283 - ABZR87_RS02535 0.49 -1.3 536,284 - ABZR87_RS02535 0.49 -1.5 536,284 - ABZR87_RS02535 0.49 -2.7 536,576 + -1.8 536,577 - -0.9 536,608 + -1.3 536,609 - +1.0 536,609 - -0.3 536,609 - +0.1 536,619 + -1.2 536,619 + -1.8 536,619 + +0.4 536,619 + -1.1 536,620 - -1.9 536,621 + -0.5 536,621 + -1.7 536,621 + +0.7 536,622 - -0.1 536,622 - +0.2 536,674 + -0.6 536,674 + -0.2 536,675 - +0.4 536,675 - +0.2 536,675 - -0.2 536,719 + -0.2 536,719 + -0.5 536,720 - +0.5 536,749 + -0.0 536,749 + -0.0 536,749 + -1.8 536,749 + -0.9 536,749 + +0.2 536,749 + -0.4 536,749 + -0.1 536,749 + +0.2 536,749 + -0.7 536,749 + +0.0 536,749 + -0.8 536,750 - -0.5 536,750 - -0.5 536,750 - -0.5 536,750 - -0.4 536,750 - +0.2 536,773 + -0.5 536,774 - -1.0 536,801 + -1.1 536,802 - -0.4 536,802 - +0.5 536,873 + ABZR87_RS02540 0.14 -1.9 536,873 + ABZR87_RS02540 0.14 -0.5 536,874 - ABZR87_RS02540 0.14 +0.4 536,882 + ABZR87_RS02540 0.15 -1.4 536,883 - ABZR87_RS02540 0.15 -0.5 536,900 + ABZR87_RS02540 0.17 -1.8 536,921 + ABZR87_RS02540 0.20 +0.6 536,922 - ABZR87_RS02540 0.20 -1.8 536,922 - ABZR87_RS02540 0.20 -2.0 536,922 - ABZR87_RS02540 0.20 -2.3 536,922 - ABZR87_RS02540 0.20 -1.9 536,922 - ABZR87_RS02540 0.20 -0.5 536,922 - ABZR87_RS02540 0.20 -1.4 536,922 - ABZR87_RS02540 0.20 +0.1 536,922 - ABZR87_RS02540 0.20 +0.1 537,008 + ABZR87_RS02540 0.31 +0.6 537,008 + ABZR87_RS02540 0.31 -1.1 537,009 - ABZR87_RS02540 0.31 -0.2 537,032 + ABZR87_RS02540 0.34 -0.2 537,032 + ABZR87_RS02540 0.34 -0.7 537,032 + ABZR87_RS02540 0.34 -1.2 537,033 - ABZR87_RS02540 0.34 -0.8 537,033 - ABZR87_RS02540 0.34 -0.4 537,033 - ABZR87_RS02540 0.34 -2.2 537,033 - ABZR87_RS02540 0.34 -1.5 537,116 + ABZR87_RS02540 0.44 +0.3 537,116 + ABZR87_RS02540 0.44 -0.4 537,117 - ABZR87_RS02540 0.44 -1.2 537,117 - ABZR87_RS02540 0.44 -0.2 537,117 - ABZR87_RS02540 0.44 -0.8 537,117 - ABZR87_RS02540 0.44 -2.6 537,302 + ABZR87_RS02540 0.67 -0.2 537,303 - ABZR87_RS02540 0.67 -1.8 537,371 + ABZR87_RS02540 0.76 -2.3 537,371 + ABZR87_RS02540 0.76 -0.2 537,371 + ABZR87_RS02540 0.76 -0.4 537,371 + ABZR87_RS02540 0.76 -2.6 537,371 + ABZR87_RS02540 0.76 -1.0 537,372 - ABZR87_RS02540 0.76 -0.9 537,372 - ABZR87_RS02540 0.76 -1.7 537,372 - ABZR87_RS02540 0.76 -1.1 537,372 - ABZR87_RS02540 0.76 -3.6 537,372 - ABZR87_RS02540 0.76 -1.0 537,372 - ABZR87_RS02540 0.76 -2.1 537,540 + -1.4 537,540 + -1.7 537,541 - +0.6 537,541 - -1.9 537,546 + -0.7 537,546 + -1.4 537,546 + +0.6 537,547 - -1.9 537,570 - +0.3 537,570 - -0.7
Or see this region's nucleotide sequence