Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02030 and ABZR87_RS02035 are separated by 82 nucleotides ABZR87_RS02035 and ABZR87_RS02040 are separated by 217 nucleotides
ABZR87_RS02030: ABZR87_RS02030 - molybdopterin oxidoreductase family protein, at 433,030 to 435,126
_RS02030
ABZR87_RS02035: ABZR87_RS02035 - substrate-binding domain-containing protein, at 435,209 to 436,204
_RS02035
ABZR87_RS02040: ABZR87_RS02040 - phosphoenolpyruvate--protein phosphotransferase, at 436,422 to 438,971
_RS02040
Position (kb) 435
436
437 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 434.228 kb on + strand, within ABZR87_RS02030 at 434.228 kb on + strand, within ABZR87_RS02030 at 434.228 kb on + strand, within ABZR87_RS02030 at 434.229 kb on - strand, within ABZR87_RS02030 at 434.279 kb on + strand, within ABZR87_RS02030 at 434.279 kb on + strand, within ABZR87_RS02030 at 434.280 kb on - strand, within ABZR87_RS02030 at 434.280 kb on - strand, within ABZR87_RS02030 at 434.280 kb on - strand, within ABZR87_RS02030 at 434.280 kb on - strand, within ABZR87_RS02030 at 434.336 kb on + strand, within ABZR87_RS02030 at 434.336 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.348 kb on + strand, within ABZR87_RS02030 at 434.349 kb on - strand, within ABZR87_RS02030 at 434.349 kb on - strand, within ABZR87_RS02030 at 434.349 kb on - strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.402 kb on + strand, within ABZR87_RS02030 at 434.403 kb on - strand, within ABZR87_RS02030 at 434.403 kb on - strand, within ABZR87_RS02030 at 434.403 kb on - strand, within ABZR87_RS02030 at 434.675 kb on + strand, within ABZR87_RS02030 at 434.681 kb on + strand, within ABZR87_RS02030 at 434.681 kb on + strand, within ABZR87_RS02030 at 434.681 kb on + strand, within ABZR87_RS02030 at 434.682 kb on - strand, within ABZR87_RS02030 at 434.801 kb on + strand, within ABZR87_RS02030 at 434.801 kb on + strand, within ABZR87_RS02030 at 434.801 kb on + strand, within ABZR87_RS02030 at 434.802 kb on - strand, within ABZR87_RS02030 at 434.802 kb on - strand, within ABZR87_RS02030 at 434.802 kb on - strand, within ABZR87_RS02030 at 434.802 kb on - strand, within ABZR87_RS02030 at 434.802 kb on - strand, within ABZR87_RS02030 at 434.807 kb on + strand, within ABZR87_RS02030 at 434.807 kb on + strand, within ABZR87_RS02030 at 434.807 kb on + strand, within ABZR87_RS02030 at 434.808 kb on - strand, within ABZR87_RS02030 at 434.890 kb on - strand, within ABZR87_RS02030 at 434.957 kb on + strand at 434.957 kb on + strand at 434.958 kb on - strand at 434.958 kb on - strand at 434.958 kb on - strand at 435.199 kb on + strand at 435.199 kb on + strand at 435.210 kb on + strand at 435.211 kb on - strand at 435.211 kb on - strand at 435.211 kb on - strand at 435.336 kb on + strand, within ABZR87_RS02035 at 435.336 kb on + strand, within ABZR87_RS02035 at 435.336 kb on + strand, within ABZR87_RS02035 at 435.336 kb on + strand, within ABZR87_RS02035 at 435.482 kb on - strand, within ABZR87_RS02035 at 435.571 kb on + strand, within ABZR87_RS02035 at 435.571 kb on + strand, within ABZR87_RS02035 at 435.572 kb on - strand, within ABZR87_RS02035 at 435.673 kb on + strand, within ABZR87_RS02035 at 435.885 kb on + strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 436.236 kb on + strand at 436.237 kb on - strand at 436.237 kb on - strand at 436.288 kb on + strand at 436.300 kb on + strand at 436.301 kb on - strand at 436.301 kb on - strand at 436.344 kb on - strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.543 kb on - strand at 436.714 kb on + strand, within ABZR87_RS02040 at 436.714 kb on + strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.765 kb on + strand, within ABZR87_RS02040 at 436.765 kb on + strand, within ABZR87_RS02040
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 434,228 + ABZR87_RS02030 0.57 -0.1 434,228 + ABZR87_RS02030 0.57 -0.8 434,228 + ABZR87_RS02030 0.57 +0.5 434,229 - ABZR87_RS02030 0.57 -0.3 434,279 + ABZR87_RS02030 0.60 -1.6 434,279 + ABZR87_RS02030 0.60 -0.1 434,280 - ABZR87_RS02030 0.60 +0.3 434,280 - ABZR87_RS02030 0.60 +0.0 434,280 - ABZR87_RS02030 0.60 -0.5 434,280 - ABZR87_RS02030 0.60 +0.2 434,336 + ABZR87_RS02030 0.62 -0.4 434,336 + ABZR87_RS02030 0.62 -0.2 434,348 + ABZR87_RS02030 0.63 +0.4 434,348 + ABZR87_RS02030 0.63 -0.6 434,348 + ABZR87_RS02030 0.63 -0.3 434,348 + ABZR87_RS02030 0.63 -0.1 434,348 + ABZR87_RS02030 0.63 -0.7 434,348 + ABZR87_RS02030 0.63 -0.2 434,348 + ABZR87_RS02030 0.63 -3.9 434,349 - ABZR87_RS02030 0.63 +0.2 434,349 - ABZR87_RS02030 0.63 -1.3 434,349 - ABZR87_RS02030 0.63 +0.2 434,402 + ABZR87_RS02030 0.65 +0.4 434,402 + ABZR87_RS02030 0.65 +0.3 434,402 + ABZR87_RS02030 0.65 +1.3 434,402 + ABZR87_RS02030 0.65 -0.4 434,402 + ABZR87_RS02030 0.65 +1.1 434,402 + ABZR87_RS02030 0.65 -0.7 434,403 - ABZR87_RS02030 0.65 -1.4 434,403 - ABZR87_RS02030 0.65 +0.1 434,403 - ABZR87_RS02030 0.65 +0.7 434,675 + ABZR87_RS02030 0.78 -0.8 434,681 + ABZR87_RS02030 0.79 +0.8 434,681 + ABZR87_RS02030 0.79 -0.2 434,681 + ABZR87_RS02030 0.79 -0.1 434,682 - ABZR87_RS02030 0.79 +0.9 434,801 + ABZR87_RS02030 0.84 -0.2 434,801 + ABZR87_RS02030 0.84 -0.3 434,801 + ABZR87_RS02030 0.84 +0.7 434,802 - ABZR87_RS02030 0.85 +0.5 434,802 - ABZR87_RS02030 0.85 -1.0 434,802 - ABZR87_RS02030 0.85 +0.2 434,802 - ABZR87_RS02030 0.85 -0.4 434,802 - ABZR87_RS02030 0.85 +0.6 434,807 + ABZR87_RS02030 0.85 +0.4 434,807 + ABZR87_RS02030 0.85 +0.1 434,807 + ABZR87_RS02030 0.85 +0.1 434,808 - ABZR87_RS02030 0.85 -0.2 434,890 - ABZR87_RS02030 0.89 -2.3 434,957 + -0.5 434,957 + -0.6 434,958 - -0.5 434,958 - -0.3 434,958 - -1.9 435,199 + +0.1 435,199 + +0.4 435,210 + +0.7 435,211 - +0.9 435,211 - +0.9 435,211 - +1.0 435,336 + ABZR87_RS02035 0.13 -0.2 435,336 + ABZR87_RS02035 0.13 -1.7 435,336 + ABZR87_RS02035 0.13 -1.0 435,336 + ABZR87_RS02035 0.13 -0.9 435,482 - ABZR87_RS02035 0.27 -0.8 435,571 + ABZR87_RS02035 0.36 +1.3 435,571 + ABZR87_RS02035 0.36 -2.5 435,572 - ABZR87_RS02035 0.36 +0.0 435,673 + ABZR87_RS02035 0.47 -0.0 435,885 + ABZR87_RS02035 0.68 -1.1 435,886 - ABZR87_RS02035 0.68 -0.3 435,886 - ABZR87_RS02035 0.68 -0.8 435,886 - ABZR87_RS02035 0.68 -1.6 436,236 + +0.3 436,237 - +0.3 436,237 - +0.8 436,288 + -0.3 436,300 + -0.1 436,301 - -1.5 436,301 - -0.7 436,344 - -2.5 436,542 + -1.9 436,542 + -0.9 436,542 + +1.3 436,542 + -2.3 436,543 - -0.8 436,714 + ABZR87_RS02040 0.11 -2.0 436,714 + ABZR87_RS02040 0.11 -2.1 436,715 - ABZR87_RS02040 0.11 +0.5 436,715 - ABZR87_RS02040 0.11 -2.6 436,715 - ABZR87_RS02040 0.11 -0.6 436,715 - ABZR87_RS02040 0.11 -1.0 436,715 - ABZR87_RS02040 0.11 +0.0 436,765 + ABZR87_RS02040 0.13 -1.5 436,765 + ABZR87_RS02040 0.13 -0.2
Or see this region's nucleotide sequence