Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01705 and ABZR87_RS01710 are separated by 108 nucleotides ABZR87_RS01710 and ABZR87_RS01715 overlap by 4 nucleotides
ABZR87_RS01705: ABZR87_RS01705 - hypothetical protein, at 357,880 to 359,220
_RS01705
ABZR87_RS01710: ABZR87_RS01710 - DMT family transporter, at 359,329 to 360,225
_RS01710
ABZR87_RS01715: ABZR87_RS01715 - M14 family metallopeptidase, at 360,222 to 361,304
_RS01715
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.429 kb on + strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.430 kb on - strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.456 kb on + strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.457 kb on - strand, within ABZR87_RS01705 at 358.567 kb on + strand, within ABZR87_RS01705 at 358.568 kb on - strand, within ABZR87_RS01705 at 358.568 kb on - strand, within ABZR87_RS01705 at 358.756 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.894 kb on + strand, within ABZR87_RS01705 at 358.895 kb on - strand, within ABZR87_RS01705 at 359.055 kb on + strand, within ABZR87_RS01705 at 359.055 kb on + strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.056 kb on - strand, within ABZR87_RS01705 at 359.218 kb on + strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.219 kb on - strand at 359.290 kb on + strand at 359.291 kb on - strand at 359.291 kb on - strand at 359.291 kb on - strand at 359.485 kb on + strand, within ABZR87_RS01710 at 359.485 kb on + strand, within ABZR87_RS01710 at 359.486 kb on - strand, within ABZR87_RS01710 at 359.486 kb on - strand, within ABZR87_RS01710 at 359.578 kb on + strand, within ABZR87_RS01710 at 359.579 kb on - strand, within ABZR87_RS01710 at 359.579 kb on - strand, within ABZR87_RS01710 at 359.614 kb on + strand, within ABZR87_RS01710 at 359.614 kb on + strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.615 kb on - strand, within ABZR87_RS01710 at 359.799 kb on + strand, within ABZR87_RS01710 at 359.800 kb on - strand, within ABZR87_RS01710 at 359.800 kb on - strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.803 kb on + strand, within ABZR87_RS01710 at 359.804 kb on - strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.836 kb on + strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 359.837 kb on - strand, within ABZR87_RS01710 at 360.252 kb on + strand at 360.252 kb on + strand at 360.252 kb on + strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.274 kb on + strand at 360.274 kb on + strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.275 kb on - strand at 360.307 kb on + strand at 360.307 kb on + strand at 360.307 kb on + strand at 360.308 kb on - strand at 360.308 kb on - strand at 360.308 kb on - strand at 360.308 kb on - strand at 360.308 kb on - strand at 360.321 kb on + strand at 360.321 kb on + strand at 360.321 kb on + strand at 360.322 kb on - strand at 360.475 kb on + strand, within ABZR87_RS01715 at 360.476 kb on - strand, within ABZR87_RS01715 at 360.733 kb on + strand, within ABZR87_RS01715 at 360.734 kb on - strand, within ABZR87_RS01715 at 360.734 kb on - strand, within ABZR87_RS01715 at 360.811 kb on + strand, within ABZR87_RS01715 at 360.811 kb on + strand, within ABZR87_RS01715 at 360.811 kb on + strand, within ABZR87_RS01715 at 360.811 kb on + strand, within ABZR87_RS01715 at 360.811 kb on + strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.812 kb on - strand, within ABZR87_RS01715 at 360.886 kb on - strand, within ABZR87_RS01715 at 360.887 kb on - strand, within ABZR87_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 358,429 + ABZR87_RS01705 0.41 -0.0 358,429 + ABZR87_RS01705 0.41 -0.1 358,429 + ABZR87_RS01705 0.41 -0.1 358,429 + ABZR87_RS01705 0.41 +0.4 358,429 + ABZR87_RS01705 0.41 -1.7 358,430 - ABZR87_RS01705 0.41 -1.1 358,430 - ABZR87_RS01705 0.41 -0.9 358,456 + ABZR87_RS01705 0.43 +0.1 358,456 + ABZR87_RS01705 0.43 -0.2 358,456 + ABZR87_RS01705 0.43 +0.3 358,456 + ABZR87_RS01705 0.43 -0.6 358,457 - ABZR87_RS01705 0.43 -0.4 358,457 - ABZR87_RS01705 0.43 -0.5 358,457 - ABZR87_RS01705 0.43 +0.2 358,457 - ABZR87_RS01705 0.43 -0.2 358,567 + ABZR87_RS01705 0.51 +1.0 358,568 - ABZR87_RS01705 0.51 +0.6 358,568 - ABZR87_RS01705 0.51 -0.1 358,756 + ABZR87_RS01705 0.65 -0.9 358,894 + ABZR87_RS01705 0.76 +0.5 358,894 + ABZR87_RS01705 0.76 -1.4 358,894 + ABZR87_RS01705 0.76 -0.1 358,895 - ABZR87_RS01705 0.76 -1.6 359,055 + ABZR87_RS01705 0.88 -1.7 359,055 + ABZR87_RS01705 0.88 +0.7 359,056 - ABZR87_RS01705 0.88 -1.2 359,056 - ABZR87_RS01705 0.88 -0.9 359,056 - ABZR87_RS01705 0.88 -0.4 359,056 - ABZR87_RS01705 0.88 +0.9 359,056 - ABZR87_RS01705 0.88 -0.5 359,218 + +0.2 359,219 - -0.9 359,219 - -0.4 359,219 - -0.0 359,219 - +0.6 359,219 - +0.2 359,290 + +0.3 359,291 - -0.1 359,291 - -0.3 359,291 - +1.0 359,485 + ABZR87_RS01710 0.17 +0.8 359,485 + ABZR87_RS01710 0.17 +1.1 359,486 - ABZR87_RS01710 0.18 +0.1 359,486 - ABZR87_RS01710 0.18 +0.3 359,578 + ABZR87_RS01710 0.28 +0.1 359,579 - ABZR87_RS01710 0.28 -0.4 359,579 - ABZR87_RS01710 0.28 -1.8 359,614 + ABZR87_RS01710 0.32 -0.0 359,614 + ABZR87_RS01710 0.32 +0.2 359,615 - ABZR87_RS01710 0.32 -0.8 359,615 - ABZR87_RS01710 0.32 -0.3 359,615 - ABZR87_RS01710 0.32 +0.6 359,615 - ABZR87_RS01710 0.32 +1.4 359,799 + ABZR87_RS01710 0.52 -0.1 359,800 - ABZR87_RS01710 0.53 +0.5 359,800 - ABZR87_RS01710 0.53 +0.9 359,803 + ABZR87_RS01710 0.53 +0.4 359,803 + ABZR87_RS01710 0.53 +0.5 359,803 + ABZR87_RS01710 0.53 +0.9 359,804 - ABZR87_RS01710 0.53 -0.8 359,836 + ABZR87_RS01710 0.57 -0.7 359,836 + ABZR87_RS01710 0.57 +0.4 359,836 + ABZR87_RS01710 0.57 +0.5 359,837 - ABZR87_RS01710 0.57 +1.0 359,837 - ABZR87_RS01710 0.57 +1.1 359,837 - ABZR87_RS01710 0.57 -0.4 359,837 - ABZR87_RS01710 0.57 +0.3 360,252 + +0.6 360,252 + -0.4 360,252 + +0.4 360,253 - +0.2 360,253 - +0.3 360,253 - +0.3 360,274 + -1.7 360,274 + +0.7 360,275 - +0.8 360,275 - +0.5 360,275 - +1.4 360,275 - -0.2 360,275 - +0.4 360,275 - -0.5 360,275 - -0.2 360,307 + +0.8 360,307 + -0.3 360,307 + -0.5 360,308 - +0.7 360,308 - -1.3 360,308 - +0.2 360,308 - +0.3 360,308 - -0.5 360,321 + +0.5 360,321 + -0.3 360,321 + +0.7 360,322 - -1.4 360,475 + ABZR87_RS01715 0.23 -0.2 360,476 - ABZR87_RS01715 0.23 +0.9 360,733 + ABZR87_RS01715 0.47 +2.7 360,734 - ABZR87_RS01715 0.47 +0.4 360,734 - ABZR87_RS01715 0.47 +0.5 360,811 + ABZR87_RS01715 0.54 +0.2 360,811 + ABZR87_RS01715 0.54 +0.2 360,811 + ABZR87_RS01715 0.54 +0.2 360,811 + ABZR87_RS01715 0.54 +1.3 360,811 + ABZR87_RS01715 0.54 -0.9 360,812 - ABZR87_RS01715 0.54 +0.6 360,812 - ABZR87_RS01715 0.54 +0.6 360,812 - ABZR87_RS01715 0.54 +0.2 360,812 - ABZR87_RS01715 0.54 +1.7 360,812 - ABZR87_RS01715 0.54 -0.4 360,812 - ABZR87_RS01715 0.54 +0.4 360,812 - ABZR87_RS01715 0.54 +0.4 360,812 - ABZR87_RS01715 0.54 +0.3 360,812 - ABZR87_RS01715 0.54 -0.1 360,812 - ABZR87_RS01715 0.54 +0.0 360,886 - ABZR87_RS01715 0.61 -0.0 360,887 - ABZR87_RS01715 0.61 -0.0
Or see this region's nucleotide sequence