Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01635 and ABZR87_RS01640 are separated by 65 nucleotides ABZR87_RS01640 and ABZR87_RS01645 are separated by 181 nucleotides ABZR87_RS01645 and ABZR87_RS01650 are separated by 141 nucleotides ABZR87_RS01650 and ABZR87_RS01655 are separated by 132 nucleotides
ABZR87_RS01635: ABZR87_RS01635 - hypothetical protein, at 343,787 to 344,461
_RS01635
ABZR87_RS01640: ABZR87_RS01640 - TlpA disulfide reductase family protein, at 344,527 to 345,051
_RS01640
ABZR87_RS01645: ABZR87_RS01645 - type II 3-dehydroquinate dehydratase, at 345,233 to 345,700
_RS01645
ABZR87_RS01650: ABZR87_RS01650 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 345,842 to 346,309
_RS01650
ABZR87_RS01655: ABZR87_RS01655 - acetyl-CoA carboxylase biotin carboxylase subunit, at 346,442 to 347,809
_RS01655
Position (kb) 345
346 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 344.350 kb on + strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.361 kb on + strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.476 kb on + strand at 344.476 kb on + strand at 344.477 kb on - strand at 344.477 kb on - strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.653 kb on + strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.848 kb on - strand, within ABZR87_RS01640 at 344.959 kb on - strand, within ABZR87_RS01640 at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.067 kb on + strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645 at 345.326 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.548 kb on + strand, within ABZR87_RS01645 at 345.605 kb on + strand, within ABZR87_RS01645 at 345.720 kb on + strand at 345.733 kb on + strand at 346.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 344,350 + ABZR87_RS01635 0.83 -0.2 344,351 - ABZR87_RS01635 0.84 -0.4 344,351 - ABZR87_RS01635 0.84 +0.5 344,351 - ABZR87_RS01635 0.84 +0.3 344,360 + ABZR87_RS01635 0.85 +0.1 344,360 + ABZR87_RS01635 0.85 -1.3 344,360 + ABZR87_RS01635 0.85 -3.2 344,361 + ABZR87_RS01635 0.85 +0.6 344,361 - ABZR87_RS01635 0.85 -0.7 344,361 - ABZR87_RS01635 0.85 +0.8 344,361 - ABZR87_RS01635 0.85 +0.2 344,361 - ABZR87_RS01635 0.85 -0.2 344,361 - ABZR87_RS01635 0.85 -0.7 344,476 + -0.5 344,476 + -0.4 344,477 - -0.1 344,477 - -0.3 344,503 + -1.2 344,503 + -0.6 344,503 + -1.0 344,503 + -0.0 344,503 + -0.7 344,503 + -0.1 344,504 - -0.7 344,504 - +0.6 344,504 - -0.5 344,504 - -1.2 344,504 - -0.4 344,504 - +0.4 344,504 - +0.9 344,504 - -0.5 344,504 - -0.2 344,504 - +0.4 344,504 - -0.2 344,504 - +1.2 344,504 - +0.5 344,505 + +0.8 344,505 + -0.4 344,505 + -2.6 344,505 + +0.1 344,505 + -0.1 344,505 + +0.9 344,505 + +0.2 344,505 + -0.6 344,505 + +0.1 344,505 + -0.7 344,505 + -0.2 344,505 + +0.3 344,505 + -0.9 344,505 + -0.7 344,505 + -0.1 344,505 + +0.1 344,505 + +0.3 344,505 + +0.3 344,506 - +1.1 344,506 - +0.3 344,506 - -0.4 344,506 - +0.4 344,506 - +0.9 344,506 - +0.9 344,506 - -0.8 344,506 - +0.2 344,506 - +0.9 344,506 - +0.6 344,506 - -1.3 344,506 - -0.6 344,506 - +0.7 344,506 - +1.3 344,506 - +0.7 344,506 - -0.2 344,506 - +1.3 344,506 - -0.1 344,507 + -0.3 344,507 + +0.3 344,507 + -0.3 344,507 + -2.2 344,507 + -1.7 344,507 + -0.1 344,507 + +0.1 344,507 + -0.1 344,507 + +1.1 344,507 + -0.2 344,507 + +0.7 344,507 + -0.4 344,507 + -0.3 344,507 + +0.0 344,507 + +0.4 344,507 + -2.7 344,507 + +1.8 344,507 + -0.6 344,507 + +0.1 344,507 + -0.2 344,507 + -0.6 344,507 + +1.6 344,507 + +0.0 344,507 + -1.7 344,507 + -0.9 344,507 + -0.1 344,507 + -0.9 344,508 - -0.3 344,508 - -0.3 344,508 - +0.6 344,508 - +0.1 344,508 - -0.1 344,508 - +0.3 344,508 - -0.4 344,508 - +0.4 344,508 - +0.5 344,508 - +1.4 344,508 - +0.0 344,508 - -0.6 344,508 - +0.6 344,508 - -0.2 344,508 - +0.3 344,508 - -1.1 344,508 - -0.3 344,508 - -0.2 344,508 - +0.8 344,508 - +0.7 344,509 + -1.4 344,509 + +0.1 344,509 + +0.9 344,509 + -0.2 344,509 + +1.2 344,509 + +0.6 344,509 + +0.2 344,509 + -1.1 344,509 + -0.2 344,509 + -0.9 344,509 + -0.5 344,509 + -0.2 344,509 + -0.1 344,509 + -0.1 344,509 + -1.3 344,510 - -0.1 344,510 - +0.8 344,510 - -1.8 344,510 - -0.6 344,510 - -1.5 344,510 - +0.7 344,510 - -0.9 344,510 - -0.1 344,510 - -0.7 344,510 - -0.4 344,510 - -0.2 344,510 - -0.2 344,510 - +0.4 344,510 - -0.2 344,510 - +0.8 344,510 - +0.0 344,510 - -0.1 344,510 - -1.0 344,510 - -0.7 344,510 - +0.9 344,510 - +0.5 344,510 - -1.0 344,510 - -1.6 344,510 - -1.1 344,510 - -1.2 344,653 + ABZR87_RS01640 0.24 -2.5 344,654 - ABZR87_RS01640 0.24 +0.5 344,654 - ABZR87_RS01640 0.24 -0.5 344,848 - ABZR87_RS01640 0.61 -1.4 344,959 - ABZR87_RS01640 0.82 -3.0 345,067 + +0.1 345,067 + +0.3 345,067 + -0.2 345,067 + +0.1 345,067 + -0.3 345,068 - +0.1 345,068 - -1.3 345,326 + ABZR87_RS01645 0.20 -1.4 345,326 + ABZR87_RS01645 0.20 -1.8 345,326 + ABZR87_RS01645 0.20 -3.8 345,548 + ABZR87_RS01645 0.67 -3.3 345,548 + ABZR87_RS01645 0.67 -2.9 345,548 + ABZR87_RS01645 0.67 -2.2 345,548 + ABZR87_RS01645 0.67 +1.1 345,605 + ABZR87_RS01645 0.79 -2.9 345,720 + -0.2 345,733 + +0.0 346,429 + -0.5
Or see this region's nucleotide sequence