Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01240 and ABZR87_RS01245 are separated by 127 nucleotides ABZR87_RS01245 and ABZR87_RS01250 are separated by 173 nucleotides ABZR87_RS01250 and ABZR87_RS01255 are separated by 314 nucleotides
ABZR87_RS01240: ABZR87_RS01240 - catalase/peroxidase HPI, at 256,490 to 258,655
_RS01240
ABZR87_RS01245: ABZR87_RS01245 - Dps family protein, at 258,783 to 259,283
_RS01245
ABZR87_RS01250: ABZR87_RS01250 - hypothetical protein, at 259,457 to 259,699
_RS01250
ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961
_RS01255
Position (kb) 258
259
260 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 257.994 kb on + strand, within ABZR87_RS01240 at 257.994 kb on + strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 257.995 kb on - strand, within ABZR87_RS01240 at 258.090 kb on + strand, within ABZR87_RS01240 at 258.091 kb on - strand, within ABZR87_RS01240 at 258.091 kb on - strand, within ABZR87_RS01240 at 258.219 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.345 kb on + strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.346 kb on - strand, within ABZR87_RS01240 at 258.391 kb on - strand, within ABZR87_RS01240 at 258.391 kb on - strand, within ABZR87_RS01240 at 258.466 kb on - strand at 258.492 kb on + strand at 258.493 kb on - strand at 258.668 kb on + strand at 258.668 kb on + strand at 258.784 kb on + strand at 258.784 kb on + strand at 258.784 kb on + strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.785 kb on - strand at 258.966 kb on - strand, within ABZR87_RS01245 at 258.966 kb on - strand, within ABZR87_RS01245 at 258.966 kb on - strand, within ABZR87_RS01245 at 259.009 kb on + strand, within ABZR87_RS01245 at 259.009 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.084 kb on + strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.085 kb on - strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.147 kb on + strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.148 kb on - strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.162 kb on + strand, within ABZR87_RS01245 at 259.163 kb on - strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.171 kb on + strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.172 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.176 kb on - strand, within ABZR87_RS01245 at 259.295 kb on + strand at 259.296 kb on - strand at 259.357 kb on - strand at 259.412 kb on + strand at 259.412 kb on + strand at 259.413 kb on - strand at 259.477 kb on + strand at 259.477 kb on + strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.478 kb on - strand at 259.498 kb on + strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.499 kb on - strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.520 kb on + strand, within ABZR87_RS01250 at 259.521 kb on - strand, within ABZR87_RS01250 at 259.792 kb on + strand at 259.792 kb on + strand at 259.792 kb on + strand at 259.793 kb on - strand at 259.793 kb on - strand at 259.965 kb on + strand at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.218 kb on - strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 257,994 + ABZR87_RS01240 0.69 -4.1 257,994 + ABZR87_RS01240 0.69 -3.9 257,995 - ABZR87_RS01240 0.69 -1.7 257,995 - ABZR87_RS01240 0.69 -2.0 257,995 - ABZR87_RS01240 0.69 -2.6 257,995 - ABZR87_RS01240 0.69 -2.1 258,090 + ABZR87_RS01240 0.74 -2.9 258,091 - ABZR87_RS01240 0.74 -2.6 258,091 - ABZR87_RS01240 0.74 -4.0 258,219 + ABZR87_RS01240 0.80 -2.7 258,345 + ABZR87_RS01240 0.86 -1.0 258,345 + ABZR87_RS01240 0.86 -4.1 258,345 + ABZR87_RS01240 0.86 -2.7 258,345 + ABZR87_RS01240 0.86 -4.0 258,345 + ABZR87_RS01240 0.86 -2.4 258,346 - ABZR87_RS01240 0.86 -2.5 258,346 - ABZR87_RS01240 0.86 -4.0 258,346 - ABZR87_RS01240 0.86 -3.4 258,391 - ABZR87_RS01240 0.88 -3.4 258,391 - ABZR87_RS01240 0.88 -3.1 258,466 - -3.4 258,492 + -3.6 258,493 - -2.3 258,668 + -3.3 258,668 + -0.5 258,784 + -2.0 258,784 + -0.7 258,784 + -0.7 258,785 - -3.0 258,785 - +0.5 258,785 - -0.5 258,785 - -0.0 258,785 - +0.4 258,785 - -0.7 258,966 - ABZR87_RS01245 0.37 -1.9 258,966 - ABZR87_RS01245 0.37 +0.9 258,966 - ABZR87_RS01245 0.37 -2.0 259,009 + ABZR87_RS01245 0.45 +2.9 259,009 + ABZR87_RS01245 0.45 -0.2 259,084 + ABZR87_RS01245 0.60 -0.1 259,084 + ABZR87_RS01245 0.60 +0.9 259,084 + ABZR87_RS01245 0.60 +1.3 259,084 + ABZR87_RS01245 0.60 +2.9 259,084 + ABZR87_RS01245 0.60 +2.9 259,085 - ABZR87_RS01245 0.60 -2.4 259,085 - ABZR87_RS01245 0.60 -1.5 259,085 - ABZR87_RS01245 0.60 +0.3 259,085 - ABZR87_RS01245 0.60 -1.5 259,085 - ABZR87_RS01245 0.60 +0.1 259,147 + ABZR87_RS01245 0.73 +1.9 259,147 + ABZR87_RS01245 0.73 +2.9 259,147 + ABZR87_RS01245 0.73 +0.6 259,147 + ABZR87_RS01245 0.73 +1.3 259,147 + ABZR87_RS01245 0.73 -0.4 259,148 - ABZR87_RS01245 0.73 -1.7 259,148 - ABZR87_RS01245 0.73 -2.4 259,148 - ABZR87_RS01245 0.73 -1.6 259,148 - ABZR87_RS01245 0.73 -1.9 259,162 + ABZR87_RS01245 0.76 +0.3 259,162 + ABZR87_RS01245 0.76 +0.6 259,162 + ABZR87_RS01245 0.76 +0.9 259,163 - ABZR87_RS01245 0.76 -2.7 259,171 + ABZR87_RS01245 0.77 +2.9 259,171 + ABZR87_RS01245 0.77 +0.6 259,172 - ABZR87_RS01245 0.78 -1.2 259,172 - ABZR87_RS01245 0.78 -0.8 259,172 - ABZR87_RS01245 0.78 -2.0 259,176 - ABZR87_RS01245 0.78 -1.5 259,176 - ABZR87_RS01245 0.78 -1.9 259,295 + -0.5 259,296 - +0.1 259,357 - -0.1 259,412 + -0.4 259,412 + -0.1 259,413 - -0.1 259,477 + -1.0 259,477 + -0.4 259,478 - -1.0 259,478 - -0.8 259,478 - -1.0 259,478 - -0.7 259,498 + ABZR87_RS01250 0.17 -1.1 259,499 - ABZR87_RS01250 0.17 -0.4 259,499 - ABZR87_RS01250 0.17 -0.2 259,499 - ABZR87_RS01250 0.17 -0.6 259,499 - ABZR87_RS01250 0.17 +0.4 259,520 + ABZR87_RS01250 0.26 -1.0 259,520 + ABZR87_RS01250 0.26 -3.0 259,520 + ABZR87_RS01250 0.26 +1.3 259,521 - ABZR87_RS01250 0.26 -1.1 259,792 + -3.4 259,792 + -3.0 259,792 + -1.1 259,793 - -0.5 259,793 - +0.2 259,965 + -0.7 260,171 + ABZR87_RS01255 0.17 -4.0 260,171 + ABZR87_RS01255 0.17 -3.2 260,171 + ABZR87_RS01255 0.17 -5.3 260,171 + ABZR87_RS01255 0.17 -6.1 260,171 + ABZR87_RS01255 0.17 -4.1 260,171 + ABZR87_RS01255 0.17 -4.5 260,172 - ABZR87_RS01255 0.17 -4.0 260,172 - ABZR87_RS01255 0.17 -3.8 260,172 - ABZR87_RS01255 0.17 -4.3 260,172 - ABZR87_RS01255 0.17 -5.1 260,172 - ABZR87_RS01255 0.17 -1.6 260,172 - ABZR87_RS01255 0.17 -5.3 260,217 + ABZR87_RS01255 0.21 -3.8 260,217 + ABZR87_RS01255 0.21 -4.5 260,217 + ABZR87_RS01255 0.21 -3.8 260,217 + ABZR87_RS01255 0.21 -4.0 260,218 - ABZR87_RS01255 0.22 -4.3 260,256 + ABZR87_RS01255 0.26 -2.7 260,256 + ABZR87_RS01255 0.26 -2.7 260,256 + ABZR87_RS01255 0.26 -5.4 260,256 + ABZR87_RS01255 0.26 -4.7 260,256 + ABZR87_RS01255 0.26 -3.8 260,256 + ABZR87_RS01255 0.26 -4.2 260,256 + ABZR87_RS01255 0.26 -4.9 260,256 + ABZR87_RS01255 0.26 -3.7 260,256 + ABZR87_RS01255 0.26 -3.8 260,256 + ABZR87_RS01255 0.26 -4.8 260,256 + ABZR87_RS01255 0.26 -5.1 260,256 + ABZR87_RS01255 0.26 -4.7 260,256 + ABZR87_RS01255 0.26 -5.3 260,256 + ABZR87_RS01255 0.26 -4.5 260,257 - ABZR87_RS01255 0.26 -4.8 260,257 - ABZR87_RS01255 0.26 -3.9 260,257 - ABZR87_RS01255 0.26 -4.6 260,257 - ABZR87_RS01255 0.26 -7.2 260,257 - ABZR87_RS01255 0.26 -5.8 260,257 - ABZR87_RS01255 0.26 -4.6 260,257 - ABZR87_RS01255 0.26 -5.2 260,257 - ABZR87_RS01255 0.26 -3.6 260,257 - ABZR87_RS01255 0.26 -5.1 260,257 - ABZR87_RS01255 0.26 -5.2 260,257 - ABZR87_RS01255 0.26 -4.6 260,257 - ABZR87_RS01255 0.26 -2.5 260,257 - ABZR87_RS01255 0.26 -4.3 260,257 - ABZR87_RS01255 0.26 -1.2 260,257 - ABZR87_RS01255 0.26 -4.2
Or see this region's nucleotide sequence