Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00665 and ABZR87_RS00670 overlap by 4 nucleotides ABZR87_RS00670 and ABZR87_RS00675 are separated by 18 nucleotides ABZR87_RS00675 and ABZR87_RS00680 are separated by 61 nucleotides ABZR87_RS00680 and ABZR87_RS00685 are separated by 109 nucleotides
ABZR87_RS00665: ABZR87_RS00665 - amino acid ABC transporter ATP-binding protein, at 136,414 to 137,214
_RS00665
ABZR87_RS00670: ABZR87_RS00670 - amino acid ABC transporter permease, at 137,211 to 137,879
_RS00670
ABZR87_RS00675: ABZR87_RS00675 - glutamine ABC transporter substrate-binding protein, at 137,898 to 138,662
_RS00675
ABZR87_RS00680: ABZR87_RS00680 - IclR family transcriptional regulator, at 138,724 to 139,494
_RS00680
ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116
_RS00685
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1
2 at 137.129 kb on + strand, within ABZR87_RS00665 at 137.129 kb on + strand, within ABZR87_RS00665 at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.263 kb on + strand at 137.264 kb on - strand at 137.264 kb on - strand at 137.264 kb on - strand at 137.290 kb on + strand, within ABZR87_RS00670 at 137.290 kb on + strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.291 kb on - strand, within ABZR87_RS00670 at 137.312 kb on - strand, within ABZR87_RS00670 at 137.330 kb on - strand, within ABZR87_RS00670 at 137.572 kb on + strand, within ABZR87_RS00670 at 137.572 kb on + strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.573 kb on - strand, within ABZR87_RS00670 at 137.585 kb on - strand, within ABZR87_RS00670 at 137.704 kb on + strand, within ABZR87_RS00670 at 137.704 kb on + strand, within ABZR87_RS00670 at 137.704 kb on + strand, within ABZR87_RS00670 at 137.705 kb on - strand, within ABZR87_RS00670 at 137.705 kb on - strand, within ABZR87_RS00670 at 137.705 kb on - strand, within ABZR87_RS00670 at 137.723 kb on - strand, within ABZR87_RS00670 at 137.723 kb on - strand, within ABZR87_RS00670 at 137.899 kb on + strand at 137.899 kb on + strand at 137.899 kb on + strand at 137.900 kb on - strand at 137.941 kb on + strand at 137.941 kb on + strand at 138.025 kb on + strand, within ABZR87_RS00675 at 138.025 kb on + strand, within ABZR87_RS00675 at 138.026 kb on - strand, within ABZR87_RS00675 at 138.082 kb on + strand, within ABZR87_RS00675 at 138.083 kb on - strand, within ABZR87_RS00675 at 138.085 kb on + strand, within ABZR87_RS00675 at 138.085 kb on + strand, within ABZR87_RS00675 at 138.107 kb on + strand, within ABZR87_RS00675 at 138.190 kb on + strand, within ABZR87_RS00675 at 138.191 kb on - strand, within ABZR87_RS00675 at 138.205 kb on + strand, within ABZR87_RS00675 at 138.205 kb on + strand, within ABZR87_RS00675 at 138.205 kb on + strand, within ABZR87_RS00675 at 138.206 kb on - strand, within ABZR87_RS00675 at 138.206 kb on - strand, within ABZR87_RS00675 at 138.245 kb on + strand, within ABZR87_RS00675 at 138.245 kb on + strand, within ABZR87_RS00675 at 138.246 kb on - strand, within ABZR87_RS00675 at 138.317 kb on - strand, within ABZR87_RS00675 at 138.320 kb on - strand, within ABZR87_RS00675 at 138.320 kb on - strand, within ABZR87_RS00675 at 138.364 kb on + strand, within ABZR87_RS00675 at 138.364 kb on + strand, within ABZR87_RS00675 at 138.364 kb on + strand, within ABZR87_RS00675 at 138.364 kb on + strand, within ABZR87_RS00675 at 138.364 kb on + strand, within ABZR87_RS00675 at 138.365 kb on - strand, within ABZR87_RS00675 at 138.365 kb on - strand, within ABZR87_RS00675 at 138.365 kb on - strand, within ABZR87_RS00675 at 138.365 kb on - strand, within ABZR87_RS00675 at 138.774 kb on + strand at 138.774 kb on + strand at 138.774 kb on + strand at 138.774 kb on + strand at 138.774 kb on + strand at 138.775 kb on - strand at 138.775 kb on - strand at 138.775 kb on - strand at 138.828 kb on + strand, within ABZR87_RS00680 at 138.828 kb on + strand, within ABZR87_RS00680 at 138.829 kb on - strand, within ABZR87_RS00680 at 138.829 kb on - strand, within ABZR87_RS00680 at 138.829 kb on - strand, within ABZR87_RS00680 at 138.829 kb on - strand, within ABZR87_RS00680 at 138.978 kb on + strand, within ABZR87_RS00680 at 139.277 kb on + strand, within ABZR87_RS00680 at 139.277 kb on + strand, within ABZR87_RS00680 at 139.277 kb on + strand, within ABZR87_RS00680 at 139.277 kb on + strand, within ABZR87_RS00680 at 139.277 kb on + strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.278 kb on - strand, within ABZR87_RS00680 at 139.334 kb on + strand, within ABZR87_RS00680 at 139.334 kb on + strand, within ABZR87_RS00680 at 139.335 kb on - strand, within ABZR87_RS00680 at 139.335 kb on - strand, within ABZR87_RS00680 at 139.579 kb on + strand at 139.580 kb on - strand at 139.599 kb on + strand at 139.599 kb on + strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.600 kb on - strand at 139.606 kb on - strand at 139.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 137,129 + ABZR87_RS00665 0.89 -0.3 137,129 + ABZR87_RS00665 0.89 +0.3 137,263 + -0.4 137,263 + -0.3 137,263 + -0.6 137,263 + +0.1 137,263 + +0.1 137,264 - +0.4 137,264 - +0.1 137,264 - +1.7 137,290 + ABZR87_RS00670 0.12 +1.2 137,290 + ABZR87_RS00670 0.12 +0.1 137,291 - ABZR87_RS00670 0.12 +1.4 137,291 - ABZR87_RS00670 0.12 +0.8 137,291 - ABZR87_RS00670 0.12 +0.8 137,291 - ABZR87_RS00670 0.12 +0.7 137,312 - ABZR87_RS00670 0.15 +2.5 137,330 - ABZR87_RS00670 0.18 +0.8 137,572 + ABZR87_RS00670 0.54 -0.4 137,572 + ABZR87_RS00670 0.54 -0.5 137,573 - ABZR87_RS00670 0.54 +1.3 137,573 - ABZR87_RS00670 0.54 +0.6 137,573 - ABZR87_RS00670 0.54 +1.5 137,573 - ABZR87_RS00670 0.54 +1.1 137,573 - ABZR87_RS00670 0.54 +0.7 137,573 - ABZR87_RS00670 0.54 -1.5 137,573 - ABZR87_RS00670 0.54 +1.8 137,573 - ABZR87_RS00670 0.54 +1.3 137,573 - ABZR87_RS00670 0.54 -0.0 137,573 - ABZR87_RS00670 0.54 +0.3 137,573 - ABZR87_RS00670 0.54 -0.4 137,585 - ABZR87_RS00670 0.56 +0.8 137,704 + ABZR87_RS00670 0.74 +0.4 137,704 + ABZR87_RS00670 0.74 -0.7 137,704 + ABZR87_RS00670 0.74 -0.1 137,705 - ABZR87_RS00670 0.74 +0.2 137,705 - ABZR87_RS00670 0.74 +1.5 137,705 - ABZR87_RS00670 0.74 +1.6 137,723 - ABZR87_RS00670 0.77 +0.8 137,723 - ABZR87_RS00670 0.77 +0.5 137,899 + +0.7 137,899 + -1.5 137,899 + -0.9 137,900 - +0.5 137,941 + +0.3 137,941 + +0.1 138,025 + ABZR87_RS00675 0.17 -0.4 138,025 + ABZR87_RS00675 0.17 +0.3 138,026 - ABZR87_RS00675 0.17 -0.6 138,082 + ABZR87_RS00675 0.24 +0.9 138,083 - ABZR87_RS00675 0.24 -0.0 138,085 + ABZR87_RS00675 0.24 -0.6 138,085 + ABZR87_RS00675 0.24 -0.8 138,107 + ABZR87_RS00675 0.27 +0.7 138,190 + ABZR87_RS00675 0.38 +1.5 138,191 - ABZR87_RS00675 0.38 -0.7 138,205 + ABZR87_RS00675 0.40 -1.4 138,205 + ABZR87_RS00675 0.40 +0.6 138,205 + ABZR87_RS00675 0.40 +0.1 138,206 - ABZR87_RS00675 0.40 +0.4 138,206 - ABZR87_RS00675 0.40 +0.6 138,245 + ABZR87_RS00675 0.45 +0.3 138,245 + ABZR87_RS00675 0.45 +0.3 138,246 - ABZR87_RS00675 0.45 +0.3 138,317 - ABZR87_RS00675 0.55 +1.1 138,320 - ABZR87_RS00675 0.55 -0.2 138,320 - ABZR87_RS00675 0.55 +0.6 138,364 + ABZR87_RS00675 0.61 +0.0 138,364 + ABZR87_RS00675 0.61 +0.4 138,364 + ABZR87_RS00675 0.61 +0.4 138,364 + ABZR87_RS00675 0.61 +0.2 138,364 + ABZR87_RS00675 0.61 +0.2 138,365 - ABZR87_RS00675 0.61 +0.9 138,365 - ABZR87_RS00675 0.61 +0.5 138,365 - ABZR87_RS00675 0.61 +1.4 138,365 - ABZR87_RS00675 0.61 +0.6 138,774 + +0.6 138,774 + +0.5 138,774 + -1.2 138,774 + +0.2 138,774 + -0.0 138,775 - +1.5 138,775 - +0.9 138,775 - -0.5 138,828 + ABZR87_RS00680 0.13 -0.1 138,828 + ABZR87_RS00680 0.13 -0.7 138,829 - ABZR87_RS00680 0.14 +0.8 138,829 - ABZR87_RS00680 0.14 +1.3 138,829 - ABZR87_RS00680 0.14 +0.3 138,829 - ABZR87_RS00680 0.14 +1.3 138,978 + ABZR87_RS00680 0.33 -0.2 139,277 + ABZR87_RS00680 0.72 -0.0 139,277 + ABZR87_RS00680 0.72 +0.1 139,277 + ABZR87_RS00680 0.72 -0.2 139,277 + ABZR87_RS00680 0.72 +0.1 139,277 + ABZR87_RS00680 0.72 -0.3 139,278 - ABZR87_RS00680 0.72 +0.1 139,278 - ABZR87_RS00680 0.72 +0.3 139,278 - ABZR87_RS00680 0.72 -1.2 139,278 - ABZR87_RS00680 0.72 +0.9 139,278 - ABZR87_RS00680 0.72 +0.7 139,278 - ABZR87_RS00680 0.72 +0.8 139,278 - ABZR87_RS00680 0.72 +1.1 139,278 - ABZR87_RS00680 0.72 +1.7 139,334 + ABZR87_RS00680 0.79 -0.2 139,334 + ABZR87_RS00680 0.79 +1.4 139,335 - ABZR87_RS00680 0.79 +0.7 139,335 - ABZR87_RS00680 0.79 +0.5 139,579 + +0.2 139,580 - +0.7 139,599 + +0.2 139,599 + -0.2 139,600 - -0.1 139,600 - -0.0 139,600 - +0.2 139,606 - +0.8 139,606 - +0.7
Or see this region's nucleotide sequence