Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00355 and ABZR87_RS00360 are separated by 187 nucleotides ABZR87_RS00360 and ABZR87_RS00365 are separated by 370 nucleotides
ABZR87_RS00355: ABZR87_RS00355 - quinolinate synthase NadA, at 71,228 to 72,376
_RS00355
ABZR87_RS00360: ABZR87_RS00360 - acyl-CoA desaturase, at 72,564 to 73,754
_RS00360
ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501
_RS00365
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.778 kb on + strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.779 kb on - strand, within ABZR87_RS00355 at 71.906 kb on - strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.913 kb on + strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 71.914 kb on - strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.183 kb on + strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.184 kb on - strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.186 kb on + strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.187 kb on - strand, within ABZR87_RS00355 at 72.468 kb on + strand at 72.468 kb on + strand at 72.486 kb on + strand at 72.486 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.549 kb on + strand at 72.550 kb on - strand at 72.880 kb on + strand, within ABZR87_RS00360 at 73.043 kb on - strand, within ABZR87_RS00360 at 73.100 kb on - strand, within ABZR87_RS00360 at 73.426 kb on + strand, within ABZR87_RS00360 at 73.427 kb on - strand, within ABZR87_RS00360 at 73.807 kb on - strand at 73.829 kb on - strand at 73.829 kb on - strand at 73.829 kb on - strand at 73.853 kb on - strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.935 kb on + strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.936 kb on - strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.937 kb on + strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.938 kb on - strand at 73.959 kb on + strand at 73.959 kb on + strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.960 kb on - strand at 73.989 kb on + strand at 73.990 kb on - strand at 73.990 kb on - strand at 74.014 kb on + strand at 74.015 kb on - strand at 74.015 kb on - strand at 74.050 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.126 kb on + strand at 74.126 kb on + strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.127 kb on - strand at 74.231 kb on + strand at 74.267 kb on + strand, within ABZR87_RS00365 at 74.268 kb on - strand, within ABZR87_RS00365 at 74.342 kb on + strand, within ABZR87_RS00365 at 74.343 kb on - strand, within ABZR87_RS00365 at 74.465 kb on + strand, within ABZR87_RS00365 at 74.466 kb on - strand, within ABZR87_RS00365 at 74.559 kb on + strand, within ABZR87_RS00365 at 74.560 kb on - strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 71,778 + ABZR87_RS00355 0.48 -0.5 71,778 + ABZR87_RS00355 0.48 -1.8 71,779 - ABZR87_RS00355 0.48 -1.4 71,779 - ABZR87_RS00355 0.48 +0.1 71,779 - ABZR87_RS00355 0.48 +0.2 71,906 - ABZR87_RS00355 0.59 -0.9 71,913 + ABZR87_RS00355 0.60 -0.4 71,913 + ABZR87_RS00355 0.60 -0.1 71,913 + ABZR87_RS00355 0.60 -1.1 71,914 - ABZR87_RS00355 0.60 -1.1 71,914 - ABZR87_RS00355 0.60 -0.1 72,183 + ABZR87_RS00355 0.83 +0.1 72,183 + ABZR87_RS00355 0.83 -3.2 72,183 + ABZR87_RS00355 0.83 -0.8 72,183 + ABZR87_RS00355 0.83 -0.7 72,183 + ABZR87_RS00355 0.83 +1.5 72,183 + ABZR87_RS00355 0.83 -0.9 72,184 - ABZR87_RS00355 0.83 -0.3 72,184 - ABZR87_RS00355 0.83 +0.0 72,184 - ABZR87_RS00355 0.83 -0.7 72,184 - ABZR87_RS00355 0.83 -0.2 72,184 - ABZR87_RS00355 0.83 -0.9 72,184 - ABZR87_RS00355 0.83 -1.2 72,184 - ABZR87_RS00355 0.83 -1.2 72,184 - ABZR87_RS00355 0.83 -0.0 72,184 - ABZR87_RS00355 0.83 -0.3 72,184 - ABZR87_RS00355 0.83 -0.6 72,184 - ABZR87_RS00355 0.83 -1.6 72,186 + ABZR87_RS00355 0.83 -0.3 72,186 + ABZR87_RS00355 0.83 -0.4 72,187 - ABZR87_RS00355 0.83 +0.6 72,187 - ABZR87_RS00355 0.83 -2.0 72,187 - ABZR87_RS00355 0.83 -0.2 72,187 - ABZR87_RS00355 0.83 +0.1 72,468 + -0.4 72,468 + +0.2 72,486 + -0.3 72,486 + +0.1 72,549 + -1.3 72,549 + +1.0 72,549 + +0.5 72,550 - -0.5 72,880 + ABZR87_RS00360 0.27 -0.9 73,043 - ABZR87_RS00360 0.40 -1.7 73,100 - ABZR87_RS00360 0.45 -1.0 73,426 + ABZR87_RS00360 0.72 -1.6 73,427 - ABZR87_RS00360 0.72 -0.9 73,807 - +0.0 73,829 - -2.2 73,829 - -0.4 73,829 - -1.0 73,853 - +0.0 73,935 + -0.1 73,935 + -0.7 73,935 + -1.3 73,935 + -1.3 73,935 + -1.8 73,935 + -1.3 73,935 + -2.7 73,935 + +0.0 73,935 + +0.2 73,935 + -2.6 73,935 + -3.1 73,936 - -0.9 73,936 - -0.1 73,936 - +0.3 73,936 - +0.8 73,936 - +0.6 73,936 - +0.0 73,936 - +1.4 73,936 - +1.0 73,936 - +0.6 73,936 - -0.1 73,936 - +0.5 73,936 - -0.2 73,936 - +0.4 73,936 - +0.1 73,936 - -0.0 73,937 + -1.5 73,937 + -0.7 73,937 + -1.0 73,937 + -1.5 73,937 + -2.1 73,937 + -2.8 73,937 + -0.9 73,937 + -0.9 73,938 - +0.8 73,938 - +0.4 73,938 - -0.0 73,938 - -0.4 73,938 - +0.6 73,959 + -0.9 73,959 + -1.5 73,960 - -0.1 73,960 - -0.3 73,960 - -0.4 73,960 - -0.5 73,960 - -0.9 73,960 - -0.2 73,960 - -0.1 73,960 - -0.2 73,960 - -0.4 73,960 - +1.4 73,989 + -0.5 73,990 - -1.2 73,990 - -0.6 74,014 + -2.8 74,015 - -0.3 74,015 - +0.2 74,050 + -3.4 74,059 + -0.6 74,059 + -1.3 74,059 + -0.2 74,059 + -2.9 74,059 + -2.9 74,059 + +0.1 74,060 - +1.3 74,060 - -1.2 74,060 - -0.9 74,126 + +0.6 74,126 + -1.9 74,127 - +1.3 74,127 - -0.2 74,127 - -0.7 74,127 - -1.1 74,127 - -0.4 74,231 + +0.6 74,267 + ABZR87_RS00365 0.10 +1.1 74,268 - ABZR87_RS00365 0.10 +1.0 74,342 + ABZR87_RS00365 0.16 -0.4 74,343 - ABZR87_RS00365 0.16 +0.2 74,465 + ABZR87_RS00365 0.25 -0.2 74,466 - ABZR87_RS00365 0.25 +1.9 74,559 + ABZR87_RS00365 0.32 -0.3 74,560 - ABZR87_RS00365 0.32 +0.6 74,621 + ABZR87_RS00365 0.36 +1.3 74,621 + ABZR87_RS00365 0.36 +0.5 74,621 + ABZR87_RS00365 0.36 -0.3 74,621 + ABZR87_RS00365 0.36 -0.2 74,622 - ABZR87_RS00365 0.36 +0.8 74,622 - ABZR87_RS00365 0.36 +0.7 74,622 - ABZR87_RS00365 0.36 +0.1 74,622 - ABZR87_RS00365 0.36 -0.0 74,622 - ABZR87_RS00365 0.36 +1.1 74,690 + ABZR87_RS00365 0.41 +0.0 74,690 + ABZR87_RS00365 0.41 +0.5 74,690 + ABZR87_RS00365 0.41 -1.4 74,690 + ABZR87_RS00365 0.41 +1.0 74,691 - ABZR87_RS00365 0.41 +0.3 74,691 - ABZR87_RS00365 0.41 +1.1 74,691 - ABZR87_RS00365 0.41 -0.1 74,691 - ABZR87_RS00365 0.41 -0.1
Or see this region's nucleotide sequence