Experiment: no_plant_soil sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotides ABZR87_RS00300 and ABZR87_RS00305 are separated by 13 nucleotides ABZR87_RS00305 and ABZR87_RS00310 are separated by 13 nucleotides
ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922
_RS00295
ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715
_RS00300
ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856
_RS00305
ABZR87_RS00310: ABZR87_RS00310 - branched-chain amino acid ABC transporter permease, at 62,870 to 63,805
_RS00310
Position (kb) 61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 60.732 kb on + strand, within ABZR87_RS00295 at 60.733 kb on - strand, within ABZR87_RS00295 at 60.879 kb on + strand at 60.911 kb on + strand at 60.912 kb on - strand at 60.922 kb on + strand at 60.922 kb on + strand at 60.922 kb on + strand at 60.923 kb on - strand at 60.961 kb on + strand at 61.244 kb on - strand, within ABZR87_RS00300 at 61.244 kb on - strand, within ABZR87_RS00300 at 61.244 kb on - strand, within ABZR87_RS00300 at 61.264 kb on + strand, within ABZR87_RS00300 at 61.264 kb on + strand, within ABZR87_RS00300 at 61.265 kb on - strand, within ABZR87_RS00300 at 61.273 kb on + strand, within ABZR87_RS00300 at 61.273 kb on + strand, within ABZR87_RS00300 at 61.274 kb on - strand, within ABZR87_RS00300 at 61.291 kb on + strand, within ABZR87_RS00300 at 61.291 kb on + strand, within ABZR87_RS00300 at 61.291 kb on + strand, within ABZR87_RS00300 at 61.292 kb on - strand, within ABZR87_RS00300 at 61.504 kb on + strand, within ABZR87_RS00300 at 61.505 kb on - strand, within ABZR87_RS00300 at 61.546 kb on + strand, within ABZR87_RS00300 at 61.546 kb on + strand, within ABZR87_RS00300 at 61.546 kb on + strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.547 kb on - strand, within ABZR87_RS00300 at 61.610 kb on - strand, within ABZR87_RS00300 at 61.734 kb on + strand at 61.735 kb on - strand at 61.812 kb on - strand at 61.974 kb on + strand, within ABZR87_RS00305 at 61.975 kb on - strand, within ABZR87_RS00305 at 61.984 kb on - strand, within ABZR87_RS00305 at 62.012 kb on + strand, within ABZR87_RS00305 at 62.013 kb on - strand, within ABZR87_RS00305 at 62.261 kb on + strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.274 kb on - strand, within ABZR87_RS00305 at 62.274 kb on - strand, within ABZR87_RS00305 at 62.453 kb on + strand, within ABZR87_RS00305 at 62.453 kb on + strand, within ABZR87_RS00305 at 62.454 kb on - strand, within ABZR87_RS00305 at 62.454 kb on - strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.654 kb on + strand, within ABZR87_RS00305 at 62.655 kb on - strand, within ABZR87_RS00305 at 62.655 kb on - strand, within ABZR87_RS00305 at 62.717 kb on + strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.751 kb on - strand at 62.751 kb on - strand at 62.751 kb on - strand at 62.810 kb on + strand at 62.811 kb on - strand at 62.811 kb on - strand at 62.871 kb on + strand at 62.998 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.141 kb on + strand, within ABZR87_RS00310 at 63.142 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.627 kb on + strand, within ABZR87_RS00310 at 63.716 kb on - strand at 63.716 kb on - strand at 63.716 kb on - strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.721 kb on - strand at 63.721 kb on - strand at 63.732 kb on + strand at 63.754 kb on - strand at 63.794 kb on - strand at 63.794 kb on - strand at 63.798 kb on - strand at 63.799 kb on + strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.802 kb on - strand at 63.821 kb on + strand at 63.822 kb on - strand at 63.822 kb on - strand at 63.838 kb on + strand at 63.838 kb on + strand at 63.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 3; outgrowth in LB remove 60,732 + ABZR87_RS00295 0.73 -1.1 60,733 - ABZR87_RS00295 0.74 -1.4 60,879 + -2.2 60,911 + -0.1 60,912 - -0.6 60,922 + -0.5 60,922 + +0.9 60,922 + -0.1 60,923 - +0.3 60,961 + -1.9 61,244 - ABZR87_RS00300 0.39 -1.1 61,244 - ABZR87_RS00300 0.39 -0.4 61,244 - ABZR87_RS00300 0.39 -0.3 61,264 + ABZR87_RS00300 0.42 -0.8 61,264 + ABZR87_RS00300 0.42 +0.3 61,265 - ABZR87_RS00300 0.42 +1.0 61,273 + ABZR87_RS00300 0.43 -0.4 61,273 + ABZR87_RS00300 0.43 +1.2 61,274 - ABZR87_RS00300 0.43 +0.8 61,291 + ABZR87_RS00300 0.45 +0.5 61,291 + ABZR87_RS00300 0.45 -1.6 61,291 + ABZR87_RS00300 0.45 -0.2 61,292 - ABZR87_RS00300 0.45 -0.2 61,504 + ABZR87_RS00300 0.73 -1.0 61,505 - ABZR87_RS00300 0.73 -0.4 61,546 + ABZR87_RS00300 0.78 -0.9 61,546 + ABZR87_RS00300 0.78 -0.4 61,546 + ABZR87_RS00300 0.78 -1.4 61,547 - ABZR87_RS00300 0.78 -0.8 61,547 - ABZR87_RS00300 0.78 -1.9 61,547 - ABZR87_RS00300 0.78 -1.7 61,547 - ABZR87_RS00300 0.78 -2.6 61,547 - ABZR87_RS00300 0.78 -0.9 61,547 - ABZR87_RS00300 0.78 -0.9 61,547 - ABZR87_RS00300 0.78 -1.0 61,547 - ABZR87_RS00300 0.78 -0.4 61,610 - ABZR87_RS00300 0.86 -0.4 61,734 + -0.1 61,735 - -1.4 61,812 - -2.6 61,974 + ABZR87_RS00305 0.22 -1.0 61,975 - ABZR87_RS00305 0.22 -2.3 61,984 - ABZR87_RS00305 0.23 -1.9 62,012 + ABZR87_RS00305 0.25 -0.0 62,013 - ABZR87_RS00305 0.25 -1.8 62,261 + ABZR87_RS00305 0.47 -1.7 62,262 - ABZR87_RS00305 0.47 +0.9 62,262 - ABZR87_RS00305 0.47 -1.3 62,262 - ABZR87_RS00305 0.47 -0.5 62,262 - ABZR87_RS00305 0.47 -0.1 62,264 + ABZR87_RS00305 0.47 -0.8 62,264 + ABZR87_RS00305 0.47 -0.2 62,264 + ABZR87_RS00305 0.47 -0.4 62,264 + ABZR87_RS00305 0.47 -1.7 62,264 + ABZR87_RS00305 0.47 -0.7 62,264 + ABZR87_RS00305 0.47 -0.2 62,264 + ABZR87_RS00305 0.47 -1.2 62,265 - ABZR87_RS00305 0.48 -0.1 62,265 - ABZR87_RS00305 0.48 -1.1 62,265 - ABZR87_RS00305 0.48 +0.3 62,267 + ABZR87_RS00305 0.48 +1.0 62,267 + ABZR87_RS00305 0.48 -0.7 62,267 + ABZR87_RS00305 0.48 -0.8 62,267 + ABZR87_RS00305 0.48 -0.1 62,267 + ABZR87_RS00305 0.48 -2.4 62,267 + ABZR87_RS00305 0.48 -0.4 62,267 + ABZR87_RS00305 0.48 +0.1 62,267 + ABZR87_RS00305 0.48 -1.8 62,267 + ABZR87_RS00305 0.48 -2.4 62,268 - ABZR87_RS00305 0.48 -2.1 62,268 - ABZR87_RS00305 0.48 +0.5 62,268 - ABZR87_RS00305 0.48 -0.0 62,268 - ABZR87_RS00305 0.48 -1.8 62,268 - ABZR87_RS00305 0.48 -0.0 62,268 - ABZR87_RS00305 0.48 +0.7 62,268 - ABZR87_RS00305 0.48 +0.1 62,268 - ABZR87_RS00305 0.48 -1.1 62,268 - ABZR87_RS00305 0.48 -1.1 62,268 - ABZR87_RS00305 0.48 +0.8 62,268 - ABZR87_RS00305 0.48 -0.9 62,268 - ABZR87_RS00305 0.48 -1.1 62,273 + ABZR87_RS00305 0.48 -0.0 62,273 + ABZR87_RS00305 0.48 -1.2 62,273 + ABZR87_RS00305 0.48 -2.6 62,274 - ABZR87_RS00305 0.48 -0.9 62,274 - ABZR87_RS00305 0.48 -0.0 62,453 + ABZR87_RS00305 0.64 +0.7 62,453 + ABZR87_RS00305 0.64 -0.7 62,454 - ABZR87_RS00305 0.64 -4.2 62,454 - ABZR87_RS00305 0.64 -0.8 62,627 + ABZR87_RS00305 0.80 -0.4 62,627 + ABZR87_RS00305 0.80 +0.1 62,627 + ABZR87_RS00305 0.80 -0.2 62,627 + ABZR87_RS00305 0.80 -0.1 62,627 + ABZR87_RS00305 0.80 -0.5 62,628 - ABZR87_RS00305 0.80 -0.8 62,628 - ABZR87_RS00305 0.80 -0.4 62,628 - ABZR87_RS00305 0.80 -0.6 62,628 - ABZR87_RS00305 0.80 -1.3 62,643 - ABZR87_RS00305 0.81 -1.9 62,643 - ABZR87_RS00305 0.81 -0.9 62,643 - ABZR87_RS00305 0.81 -0.5 62,654 + ABZR87_RS00305 0.82 -2.6 62,655 - ABZR87_RS00305 0.82 -2.3 62,655 - ABZR87_RS00305 0.82 +0.1 62,717 + ABZR87_RS00305 0.88 +0.2 62,718 - ABZR87_RS00305 0.88 -1.1 62,718 - ABZR87_RS00305 0.88 -1.9 62,718 - ABZR87_RS00305 0.88 -1.5 62,718 - ABZR87_RS00305 0.88 -0.9 62,751 - -2.1 62,751 - -0.9 62,751 - -0.9 62,810 + -1.2 62,811 - +0.2 62,811 - -1.6 62,871 + -1.1 62,998 + ABZR87_RS00310 0.14 -0.8 63,123 + ABZR87_RS00310 0.27 -1.3 63,123 + ABZR87_RS00310 0.27 -1.2 63,123 + ABZR87_RS00310 0.27 -3.2 63,123 + ABZR87_RS00310 0.27 -0.9 63,123 + ABZR87_RS00310 0.27 +0.4 63,123 + ABZR87_RS00310 0.27 -0.2 63,123 + ABZR87_RS00310 0.27 -0.7 63,123 + ABZR87_RS00310 0.27 +0.0 63,123 + ABZR87_RS00310 0.27 -1.0 63,123 + ABZR87_RS00310 0.27 -0.9 63,124 - ABZR87_RS00310 0.27 -0.3 63,124 - ABZR87_RS00310 0.27 -0.9 63,124 - ABZR87_RS00310 0.27 -1.3 63,124 - ABZR87_RS00310 0.27 -1.7 63,141 + ABZR87_RS00310 0.29 -0.4 63,142 - ABZR87_RS00310 0.29 -1.3 63,550 - ABZR87_RS00310 0.73 -0.9 63,550 - ABZR87_RS00310 0.73 -0.8 63,550 - ABZR87_RS00310 0.73 +0.4 63,550 - ABZR87_RS00310 0.73 -0.0 63,550 - ABZR87_RS00310 0.73 -0.1 63,627 + ABZR87_RS00310 0.81 -0.0 63,716 - +1.0 63,716 - -2.2 63,716 - -0.4 63,720 + -0.6 63,720 + +0.1 63,720 + +0.4 63,721 - -1.1 63,721 - -0.6 63,732 + -0.6 63,754 - -1.2 63,794 - -1.0 63,794 - -1.5 63,798 - -3.2 63,799 + -2.3 63,800 - -0.7 63,800 - -0.9 63,800 - -0.6 63,800 - +1.6 63,802 - -1.3 63,821 + -2.7 63,822 - -0.0 63,822 - -0.6 63,838 + -1.3 63,838 + -1.2 63,839 - -0.5
Or see this region's nucleotide sequence