Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21755 and ABZR86_RS21760 overlap by 4 nucleotides ABZR86_RS21760 and ABZR86_RS21765 are separated by 74 nucleotides ABZR86_RS21765 and ABZR86_RS21770 are separated by 68 nucleotides
ABZR86_RS21755: ABZR86_RS21755 - cytochrome c, at 324,922 to 326,211
_RS21755
ABZR86_RS21760: ABZR86_RS21760 - c-type cytochrome, at 326,208 to 326,966
_RS21760
ABZR86_RS21765: ABZR86_RS21765 - amidase, at 327,041 to 328,666
_RS21765
ABZR86_RS21770: ABZR86_RS21770 - class II 3-deoxy-7-phosphoheptulonate synthase, at 328,735 to 330,108
_RS21770
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.051 kb on + strand, within ABZR86_RS21755 at 326.051 kb on + strand, within ABZR86_RS21755 at 326.052 kb on - strand, within ABZR86_RS21755 at 326.428 kb on + strand, within ABZR86_RS21760 at 326.428 kb on + strand, within ABZR86_RS21760 at 326.429 kb on - strand, within ABZR86_RS21760 at 326.429 kb on - strand, within ABZR86_RS21760 at 326.435 kb on - strand, within ABZR86_RS21760 at 326.435 kb on - strand, within ABZR86_RS21760 at 326.623 kb on + strand, within ABZR86_RS21760 at 326.623 kb on + strand, within ABZR86_RS21760 at 326.624 kb on - strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.644 kb on + strand, within ABZR86_RS21760 at 326.645 kb on - strand, within ABZR86_RS21760 at 326.645 kb on - strand, within ABZR86_RS21760 at 326.645 kb on - strand, within ABZR86_RS21760 at 326.671 kb on + strand, within ABZR86_RS21760 at 326.671 kb on + strand, within ABZR86_RS21760 at 326.671 kb on + strand, within ABZR86_RS21760 at 326.671 kb on + strand, within ABZR86_RS21760 at 326.671 kb on + strand, within ABZR86_RS21760 at 326.672 kb on - strand, within ABZR86_RS21760 at 326.672 kb on - strand, within ABZR86_RS21760 at 326.672 kb on - strand, within ABZR86_RS21760 at 326.672 kb on - strand, within ABZR86_RS21760 at 326.686 kb on + strand, within ABZR86_RS21760 at 326.686 kb on + strand, within ABZR86_RS21760 at 326.687 kb on - strand, within ABZR86_RS21760 at 326.810 kb on + strand, within ABZR86_RS21760 at 326.810 kb on + strand, within ABZR86_RS21760 at 326.960 kb on + strand at 326.961 kb on - strand at 326.975 kb on + strand at 326.975 kb on + strand at 326.975 kb on + strand at 326.976 kb on - strand at 326.976 kb on - strand at 326.976 kb on - strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.978 kb on - strand at 326.978 kb on - strand at 327.005 kb on - strand at 328.082 kb on + strand, within ABZR86_RS21765 at 328.082 kb on + strand, within ABZR86_RS21765 at 328.082 kb on + strand, within ABZR86_RS21765 at 328.082 kb on + strand, within ABZR86_RS21765 at 328.083 kb on - strand, within ABZR86_RS21765 at 328.083 kb on - strand, within ABZR86_RS21765 at 328.083 kb on - strand, within ABZR86_RS21765 at 328.099 kb on + strand, within ABZR86_RS21765 at 328.099 kb on + strand, within ABZR86_RS21765 at 328.100 kb on - strand, within ABZR86_RS21765 at 328.100 kb on - strand, within ABZR86_RS21765 at 328.109 kb on + strand, within ABZR86_RS21765 at 328.256 kb on + strand, within ABZR86_RS21765 at 328.256 kb on + strand, within ABZR86_RS21765 at 328.256 kb on + strand, within ABZR86_RS21765 at 328.256 kb on + strand, within ABZR86_RS21765 at 328.257 kb on - strand, within ABZR86_RS21765 at 328.257 kb on - strand, within ABZR86_RS21765 at 328.257 kb on - strand, within ABZR86_RS21765 at 328.556 kb on + strand at 328.557 kb on - strand at 328.563 kb on - strand at 328.563 kb on - strand at 328.563 kb on - strand at 328.606 kb on + strand at 328.607 kb on - strand at 328.672 kb on - strand at 328.672 kb on - strand at 328.672 kb on - strand at 328.679 kb on - strand at 328.679 kb on - strand at 328.736 kb on + strand at 328.737 kb on - strand at 328.799 kb on + strand at 328.799 kb on + strand at 328.800 kb on - strand at 328.800 kb on - strand at 328.800 kb on - strand at 328.830 kb on - strand at 328.978 kb on - strand, within ABZR86_RS21770 at 329.001 kb on - strand, within ABZR86_RS21770 at 329.022 kb on + strand, within ABZR86_RS21770 at 329.023 kb on - strand, within ABZR86_RS21770 at 329.252 kb on + strand, within ABZR86_RS21770 at 329.366 kb on + strand, within ABZR86_RS21770 at 329.366 kb on + strand, within ABZR86_RS21770 at 329.366 kb on + strand, within ABZR86_RS21770 at 329.366 kb on + strand, within ABZR86_RS21770 at 329.367 kb on - strand, within ABZR86_RS21770 at 329.532 kb on - strand, within ABZR86_RS21770
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 326,051 + ABZR86_RS21755 0.88 -2.1 326,051 + ABZR86_RS21755 0.88 -0.5 326,052 - ABZR86_RS21755 0.88 +0.1 326,428 + ABZR86_RS21760 0.29 +1.8 326,428 + ABZR86_RS21760 0.29 -0.2 326,429 - ABZR86_RS21760 0.29 +0.0 326,429 - ABZR86_RS21760 0.29 +0.2 326,435 - ABZR86_RS21760 0.30 -0.0 326,435 - ABZR86_RS21760 0.30 +1.3 326,623 + ABZR86_RS21760 0.55 -0.9 326,623 + ABZR86_RS21760 0.55 -1.0 326,624 - ABZR86_RS21760 0.55 -0.5 326,644 + ABZR86_RS21760 0.57 -0.8 326,644 + ABZR86_RS21760 0.57 +0.0 326,644 + ABZR86_RS21760 0.57 +0.5 326,644 + ABZR86_RS21760 0.57 +0.8 326,644 + ABZR86_RS21760 0.57 -0.9 326,644 + ABZR86_RS21760 0.57 -0.1 326,644 + ABZR86_RS21760 0.57 -0.4 326,645 - ABZR86_RS21760 0.58 -0.0 326,645 - ABZR86_RS21760 0.58 -0.6 326,645 - ABZR86_RS21760 0.58 -0.7 326,671 + ABZR86_RS21760 0.61 -0.5 326,671 + ABZR86_RS21760 0.61 +0.1 326,671 + ABZR86_RS21760 0.61 +0.8 326,671 + ABZR86_RS21760 0.61 +0.5 326,671 + ABZR86_RS21760 0.61 -0.5 326,672 - ABZR86_RS21760 0.61 -0.2 326,672 - ABZR86_RS21760 0.61 +0.3 326,672 - ABZR86_RS21760 0.61 -0.0 326,672 - ABZR86_RS21760 0.61 -0.3 326,686 + ABZR86_RS21760 0.63 -1.3 326,686 + ABZR86_RS21760 0.63 -0.9 326,687 - ABZR86_RS21760 0.63 -1.4 326,810 + ABZR86_RS21760 0.79 -1.2 326,810 + ABZR86_RS21760 0.79 +0.6 326,960 + -1.0 326,961 - +0.6 326,975 + -0.7 326,975 + -0.8 326,975 + -0.5 326,976 - -0.1 326,976 - -1.7 326,976 - +0.8 326,977 + +0.3 326,977 + -0.9 326,977 + +0.7 326,977 + +1.9 326,977 + -0.1 326,977 + +0.1 326,977 + +0.5 326,978 - +0.8 326,978 - -0.8 327,005 - +0.4 328,082 + ABZR86_RS21765 0.64 +0.4 328,082 + ABZR86_RS21765 0.64 +0.4 328,082 + ABZR86_RS21765 0.64 -1.4 328,082 + ABZR86_RS21765 0.64 +0.4 328,083 - ABZR86_RS21765 0.64 +0.6 328,083 - ABZR86_RS21765 0.64 +0.9 328,083 - ABZR86_RS21765 0.64 +0.7 328,099 + ABZR86_RS21765 0.65 +0.5 328,099 + ABZR86_RS21765 0.65 +0.4 328,100 - ABZR86_RS21765 0.65 +1.1 328,100 - ABZR86_RS21765 0.65 -0.3 328,109 + ABZR86_RS21765 0.66 +0.8 328,256 + ABZR86_RS21765 0.75 -0.4 328,256 + ABZR86_RS21765 0.75 +0.1 328,256 + ABZR86_RS21765 0.75 +1.8 328,256 + ABZR86_RS21765 0.75 -0.6 328,257 - ABZR86_RS21765 0.75 +0.2 328,257 - ABZR86_RS21765 0.75 -1.4 328,257 - ABZR86_RS21765 0.75 +0.6 328,556 + +0.8 328,557 - -0.1 328,563 - -1.5 328,563 - -0.8 328,563 - +0.1 328,606 + -1.0 328,607 - -0.3 328,672 - -0.2 328,672 - -0.5 328,672 - +0.3 328,679 - -0.0 328,679 - +1.5 328,736 + +0.6 328,737 - +1.0 328,799 + +0.3 328,799 + -0.5 328,800 - -0.1 328,800 - -0.9 328,800 - -0.7 328,830 - +0.4 328,978 - ABZR86_RS21770 0.18 +1.1 329,001 - ABZR86_RS21770 0.19 +0.1 329,022 + ABZR86_RS21770 0.21 -0.6 329,023 - ABZR86_RS21770 0.21 -1.2 329,252 + ABZR86_RS21770 0.38 -0.3 329,366 + ABZR86_RS21770 0.46 +0.3 329,366 + ABZR86_RS21770 0.46 +0.1 329,366 + ABZR86_RS21770 0.46 +0.3 329,366 + ABZR86_RS21770 0.46 +0.1 329,367 - ABZR86_RS21770 0.46 +1.2 329,532 - ABZR86_RS21770 0.58 -1.0
Or see this region's nucleotide sequence