Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20860 and ABZR86_RS20865 are separated by 181 nucleotides ABZR86_RS20865 and ABZR86_RS20870 are separated by 35 nucleotides
ABZR86_RS20860: ABZR86_RS20860 - transcriptional regulator GcvA, at 143,291 to 144,202
_RS20860
ABZR86_RS20865: ABZR86_RS20865 - SDR family oxidoreductase, at 144,384 to 145,157
_RS20865
ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230
_RS20870
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2
3 at 143.502 kb on - strand, within ABZR86_RS20860 at 143.630 kb on + strand, within ABZR86_RS20860 at 143.701 kb on - strand, within ABZR86_RS20860 at 144.211 kb on - strand at 144.282 kb on + strand at 144.283 kb on - strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.289 kb on - strand at 144.292 kb on + strand at 144.293 kb on - strand at 144.331 kb on - strand at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.921 kb on - strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 145.205 kb on + strand at 145.310 kb on - strand, within ABZR86_RS20870 at 145.749 kb on - strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.836 kb on - strand, within ABZR86_RS20870 at 146.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 143,502 - ABZR86_RS20860 0.23 +0.6 143,630 + ABZR86_RS20860 0.37 +3.3 143,701 - ABZR86_RS20860 0.45 +0.6 144,211 - -1.6 144,282 + -1.2 144,283 - -0.3 144,288 + -0.4 144,288 + -0.6 144,288 + +0.3 144,289 - -0.5 144,292 + -0.1 144,293 - -0.5 144,331 - -0.4 144,711 + ABZR86_RS20865 0.42 -0.7 144,711 + ABZR86_RS20865 0.42 -0.4 144,711 + ABZR86_RS20865 0.42 +0.7 144,712 - ABZR86_RS20865 0.42 -0.2 144,712 - ABZR86_RS20865 0.42 +0.7 144,712 - ABZR86_RS20865 0.42 +0.4 144,712 - ABZR86_RS20865 0.42 -0.5 144,852 + ABZR86_RS20865 0.60 +0.9 144,852 + ABZR86_RS20865 0.60 +1.6 144,921 - ABZR86_RS20865 0.69 +0.2 144,966 + ABZR86_RS20865 0.75 -0.4 144,966 + ABZR86_RS20865 0.75 +0.2 144,967 - ABZR86_RS20865 0.75 -1.6 144,967 - ABZR86_RS20865 0.75 +0.6 145,205 + -1.0 145,310 - ABZR86_RS20870 0.11 -1.5 145,749 - ABZR86_RS20870 0.54 +0.4 145,835 + ABZR86_RS20870 0.62 -0.4 145,835 + ABZR86_RS20870 0.62 +0.4 145,835 + ABZR86_RS20870 0.62 +0.4 145,835 + ABZR86_RS20870 0.62 +0.8 145,836 - ABZR86_RS20870 0.62 -0.1 146,156 + +0.6
Or see this region's nucleotide sequence