Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18315 and ABZR86_RS18320 are separated by 39 nucleotides ABZR86_RS18320 and ABZR86_RS18325 are separated by 252 nucleotides
ABZR86_RS18315: ABZR86_RS18315 - hypothetical protein, at 85,287 to 86,042
_RS18315
ABZR86_RS18320: ABZR86_RS18320 - rRNA pseudouridine synthase, at 86,082 to 86,792
_RS18320
ABZR86_RS18325: ABZR86_RS18325 - serine hydrolase domain-containing protein, at 87,045 to 88,211
_RS18325
Position (kb) 86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.158 kb on + strand at 85.159 kb on - strand at 85.159 kb on - strand at 85.425 kb on + strand, within ABZR86_RS18315 at 85.426 kb on - strand, within ABZR86_RS18315 at 85.426 kb on - strand, within ABZR86_RS18315 at 85.451 kb on - strand, within ABZR86_RS18315 at 85.571 kb on + strand, within ABZR86_RS18315 at 85.571 kb on + strand, within ABZR86_RS18315 at 85.572 kb on - strand, within ABZR86_RS18315 at 85.572 kb on - strand, within ABZR86_RS18315 at 85.572 kb on - strand, within ABZR86_RS18315 at 85.678 kb on - strand, within ABZR86_RS18315 at 85.791 kb on + strand, within ABZR86_RS18315 at 85.792 kb on - strand, within ABZR86_RS18315 at 85.792 kb on - strand, within ABZR86_RS18315 at 85.812 kb on + strand, within ABZR86_RS18315 at 85.813 kb on - strand, within ABZR86_RS18315 at 86.097 kb on - strand at 86.107 kb on + strand at 86.290 kb on + strand, within ABZR86_RS18320 at 86.290 kb on + strand, within ABZR86_RS18320 at 86.290 kb on + strand, within ABZR86_RS18320 at 86.290 kb on + strand, within ABZR86_RS18320 at 86.353 kb on - strand, within ABZR86_RS18320 at 86.430 kb on + strand, within ABZR86_RS18320 at 86.496 kb on - strand, within ABZR86_RS18320 at 86.585 kb on + strand, within ABZR86_RS18320 at 86.586 kb on - strand, within ABZR86_RS18320 at 86.720 kb on - strand, within ABZR86_RS18320 at 86.822 kb on + strand at 86.822 kb on + strand at 86.822 kb on + strand at 86.824 kb on + strand at 86.825 kb on - strand at 86.825 kb on - strand at 87.105 kb on - strand at 87.223 kb on + strand, within ABZR86_RS18325 at 87.223 kb on + strand, within ABZR86_RS18325 at 87.224 kb on - strand, within ABZR86_RS18325 at 87.224 kb on - strand, within ABZR86_RS18325 at 87.224 kb on - strand, within ABZR86_RS18325 at 87.267 kb on + strand, within ABZR86_RS18325 at 87.268 kb on - strand, within ABZR86_RS18325 at 87.273 kb on + strand, within ABZR86_RS18325 at 87.274 kb on - strand, within ABZR86_RS18325 at 87.435 kb on + strand, within ABZR86_RS18325 at 87.555 kb on - strand, within ABZR86_RS18325 at 87.565 kb on - strand, within ABZR86_RS18325 at 87.565 kb on - strand, within ABZR86_RS18325 at 87.663 kb on + strand, within ABZR86_RS18325 at 87.711 kb on + strand, within ABZR86_RS18325 at 87.712 kb on - strand, within ABZR86_RS18325
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 85,158 + +0.1 85,159 - -0.8 85,159 - +0.0 85,425 + ABZR86_RS18315 0.18 +0.7 85,426 - ABZR86_RS18315 0.18 -1.9 85,426 - ABZR86_RS18315 0.18 +0.9 85,451 - ABZR86_RS18315 0.22 +0.4 85,571 + ABZR86_RS18315 0.38 -0.3 85,571 + ABZR86_RS18315 0.38 -0.8 85,572 - ABZR86_RS18315 0.38 +0.6 85,572 - ABZR86_RS18315 0.38 +0.4 85,572 - ABZR86_RS18315 0.38 -1.1 85,678 - ABZR86_RS18315 0.52 +0.1 85,791 + ABZR86_RS18315 0.67 -0.2 85,792 - ABZR86_RS18315 0.67 +0.5 85,792 - ABZR86_RS18315 0.67 -1.3 85,812 + ABZR86_RS18315 0.69 -0.3 85,813 - ABZR86_RS18315 0.70 +0.8 86,097 - +0.6 86,107 + +0.7 86,290 + ABZR86_RS18320 0.29 -0.2 86,290 + ABZR86_RS18320 0.29 +0.6 86,290 + ABZR86_RS18320 0.29 -0.9 86,290 + ABZR86_RS18320 0.29 -0.7 86,353 - ABZR86_RS18320 0.38 -1.0 86,430 + ABZR86_RS18320 0.49 -0.3 86,496 - ABZR86_RS18320 0.58 +0.7 86,585 + ABZR86_RS18320 0.71 -0.5 86,586 - ABZR86_RS18320 0.71 +0.3 86,720 - ABZR86_RS18320 0.90 -2.8 86,822 + +0.9 86,822 + -0.8 86,822 + +0.3 86,824 + +0.1 86,825 - -0.8 86,825 - +0.4 87,105 - +0.4 87,223 + ABZR86_RS18325 0.15 -0.0 87,223 + ABZR86_RS18325 0.15 +0.4 87,224 - ABZR86_RS18325 0.15 +0.3 87,224 - ABZR86_RS18325 0.15 +1.2 87,224 - ABZR86_RS18325 0.15 +1.1 87,267 + ABZR86_RS18325 0.19 +1.4 87,268 - ABZR86_RS18325 0.19 +0.5 87,273 + ABZR86_RS18325 0.20 -0.5 87,274 - ABZR86_RS18325 0.20 -0.3 87,435 + ABZR86_RS18325 0.33 +0.4 87,555 - ABZR86_RS18325 0.44 -0.1 87,565 - ABZR86_RS18325 0.45 -2.0 87,565 - ABZR86_RS18325 0.45 -0.5 87,663 + ABZR86_RS18325 0.53 +1.2 87,711 + ABZR86_RS18325 0.57 +2.1 87,712 - ABZR86_RS18325 0.57 +0.8
Or see this region's nucleotide sequence