Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18265 and ABZR86_RS18270 are separated by 859 nucleotides ABZR86_RS18270 and ABZR86_RS18275 are separated by 27 nucleotides ABZR86_RS18275 and ABZR86_RS18280 are separated by 141 nucleotides
ABZR86_RS18265: ABZR86_RS18265 - hypothetical protein, at 70,102 to 70,380
_RS18265
ABZR86_RS18270: ABZR86_RS18270 - hypothetical protein, at 71,240 to 71,935
_RS18270
ABZR86_RS18275: ABZR86_RS18275 - TetR/AcrR family transcriptional regulator, at 71,963 to 72,577
_RS18275
ABZR86_RS18280: ABZR86_RS18280 - efflux RND transporter periplasmic adaptor subunit, at 72,719 to 73,909
_RS18280
Position (kb) 71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.315 kb on + strand, within ABZR86_RS18265 at 70.349 kb on + strand, within ABZR86_RS18265 at 70.350 kb on - strand, within ABZR86_RS18265 at 70.350 kb on - strand, within ABZR86_RS18265 at 70.379 kb on - strand at 71.163 kb on + strand at 71.210 kb on - strand at 71.483 kb on + strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.520 kb on - strand, within ABZR86_RS18270 at 71.544 kb on + strand, within ABZR86_RS18270 at 71.545 kb on - strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.552 kb on + strand, within ABZR86_RS18270 at 71.553 kb on - strand, within ABZR86_RS18270 at 71.553 kb on - strand, within ABZR86_RS18270 at 71.553 kb on - strand, within ABZR86_RS18270 at 71.553 kb on - strand, within ABZR86_RS18270 at 71.559 kb on + strand, within ABZR86_RS18270 at 71.560 kb on - strand, within ABZR86_RS18270 at 71.711 kb on + strand, within ABZR86_RS18270 at 71.712 kb on - strand, within ABZR86_RS18270 at 71.802 kb on + strand, within ABZR86_RS18270 at 71.832 kb on - strand, within ABZR86_RS18270 at 71.832 kb on - strand, within ABZR86_RS18270 at 71.897 kb on + strand at 71.985 kb on + strand at 72.033 kb on + strand, within ABZR86_RS18275 at 72.213 kb on + strand, within ABZR86_RS18275 at 72.213 kb on + strand, within ABZR86_RS18275 at 72.214 kb on - strand, within ABZR86_RS18275 at 72.214 kb on - strand, within ABZR86_RS18275 at 72.444 kb on + strand, within ABZR86_RS18275 at 72.444 kb on + strand, within ABZR86_RS18275 at 72.445 kb on - strand, within ABZR86_RS18275 at 72.612 kb on - strand at 72.615 kb on + strand at 72.615 kb on + strand at 72.616 kb on - strand at 72.668 kb on + strand at 72.686 kb on - strand at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.903 kb on - strand, within ABZR86_RS18280 at 72.903 kb on - strand, within ABZR86_RS18280
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 70,315 + ABZR86_RS18265 0.76 -0.4 70,349 + ABZR86_RS18265 0.89 +1.4 70,350 - ABZR86_RS18265 0.89 -0.4 70,350 - ABZR86_RS18265 0.89 +0.3 70,379 - -0.5 71,163 + -1.2 71,210 - +0.7 71,483 + ABZR86_RS18270 0.35 -0.4 71,520 - ABZR86_RS18270 0.40 -0.7 71,520 - ABZR86_RS18270 0.40 -1.4 71,520 - ABZR86_RS18270 0.40 -0.2 71,520 - ABZR86_RS18270 0.40 +0.1 71,520 - ABZR86_RS18270 0.40 +0.7 71,520 - ABZR86_RS18270 0.40 -0.0 71,544 + ABZR86_RS18270 0.44 -0.9 71,545 - ABZR86_RS18270 0.44 -0.2 71,552 + ABZR86_RS18270 0.45 +1.2 71,552 + ABZR86_RS18270 0.45 -0.1 71,552 + ABZR86_RS18270 0.45 +2.4 71,552 + ABZR86_RS18270 0.45 +0.6 71,552 + ABZR86_RS18270 0.45 -0.2 71,552 + ABZR86_RS18270 0.45 -1.6 71,552 + ABZR86_RS18270 0.45 -0.2 71,553 - ABZR86_RS18270 0.45 +0.2 71,553 - ABZR86_RS18270 0.45 +0.7 71,553 - ABZR86_RS18270 0.45 +0.6 71,553 - ABZR86_RS18270 0.45 -0.7 71,559 + ABZR86_RS18270 0.46 -0.6 71,560 - ABZR86_RS18270 0.46 -0.4 71,711 + ABZR86_RS18270 0.68 +0.3 71,712 - ABZR86_RS18270 0.68 -0.0 71,802 + ABZR86_RS18270 0.81 +1.3 71,832 - ABZR86_RS18270 0.85 +0.8 71,832 - ABZR86_RS18270 0.85 -0.8 71,897 + -0.1 71,985 + +0.7 72,033 + ABZR86_RS18275 0.11 +0.2 72,213 + ABZR86_RS18275 0.41 +0.7 72,213 + ABZR86_RS18275 0.41 -0.2 72,214 - ABZR86_RS18275 0.41 +0.7 72,214 - ABZR86_RS18275 0.41 +0.5 72,444 + ABZR86_RS18275 0.78 +1.1 72,444 + ABZR86_RS18275 0.78 +0.5 72,445 - ABZR86_RS18275 0.78 +0.1 72,612 - +0.5 72,615 + -0.2 72,615 + -0.8 72,616 - +2.3 72,668 + -2.1 72,686 - -0.8 72,902 + ABZR86_RS18280 0.15 +0.1 72,902 + ABZR86_RS18280 0.15 +0.4 72,902 + ABZR86_RS18280 0.15 -0.9 72,902 + ABZR86_RS18280 0.15 -1.3 72,903 - ABZR86_RS18280 0.15 -0.8 72,903 - ABZR86_RS18280 0.15 -0.1
Or see this region's nucleotide sequence