Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13590 and ABZR86_RS13595 are separated by 45 nucleotides ABZR86_RS13595 and ABZR86_RS13600 are separated by 104 nucleotides ABZR86_RS13600 and ABZR86_RS13605 are separated by 120 nucleotides
ABZR86_RS13590: ABZR86_RS13590 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,040,994 to 3,042,361
_RS13590
ABZR86_RS13595: ABZR86_RS13595 - hypothetical protein, at 3,042,407 to 3,042,958
_RS13595
ABZR86_RS13600: ABZR86_RS13600 - F0F1 ATP synthase subunit epsilon, at 3,043,063 to 3,043,488
_RS13600
ABZR86_RS13605: ABZR86_RS13605 - F0F1 ATP synthase subunit beta, at 3,043,609 to 3,045,042
_RS13605
Position (kb)
3042
3043 Strain fitness (log2 ratio)
-2
-1
0
1 at 3042.398 kb on - strand at 3042.471 kb on + strand, within ABZR86_RS13595 at 3042.472 kb on - strand, within ABZR86_RS13595 at 3042.472 kb on - strand, within ABZR86_RS13595 at 3042.620 kb on - strand, within ABZR86_RS13595 at 3042.620 kb on - strand, within ABZR86_RS13595 at 3042.620 kb on - strand, within ABZR86_RS13595 at 3042.620 kb on - strand, within ABZR86_RS13595 at 3042.620 kb on - strand, within ABZR86_RS13595 at 3042.621 kb on + strand, within ABZR86_RS13595 at 3042.621 kb on + strand, within ABZR86_RS13595 at 3042.621 kb on + strand, within ABZR86_RS13595 at 3042.621 kb on + strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.622 kb on - strand, within ABZR86_RS13595 at 3042.665 kb on + strand, within ABZR86_RS13595 at 3042.665 kb on + strand, within ABZR86_RS13595 at 3042.666 kb on - strand, within ABZR86_RS13595 at 3042.666 kb on - strand, within ABZR86_RS13595 at 3042.753 kb on + strand, within ABZR86_RS13595 at 3042.816 kb on + strand, within ABZR86_RS13595 at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.031 kb on + strand at 3043.032 kb on - strand at 3043.032 kb on - strand at 3043.032 kb on - strand at 3043.032 kb on - strand at 3043.032 kb on - strand at 3043.521 kb on - strand at 3043.535 kb on - strand at 3043.573 kb on - strand at 3043.573 kb on - strand at 3043.573 kb on - strand at 3043.573 kb on - strand at 3043.576 kb on - strand at 3043.576 kb on - strand at 3043.576 kb on - strand at 3043.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 3,042,398 - -1.0 3,042,471 + ABZR86_RS13595 0.12 -0.5 3,042,472 - ABZR86_RS13595 0.12 -0.9 3,042,472 - ABZR86_RS13595 0.12 +0.4 3,042,620 - ABZR86_RS13595 0.39 +0.6 3,042,620 - ABZR86_RS13595 0.39 -1.1 3,042,620 - ABZR86_RS13595 0.39 -0.3 3,042,620 - ABZR86_RS13595 0.39 -0.4 3,042,620 - ABZR86_RS13595 0.39 +0.2 3,042,621 + ABZR86_RS13595 0.39 +0.6 3,042,621 + ABZR86_RS13595 0.39 -1.1 3,042,621 + ABZR86_RS13595 0.39 +0.5 3,042,621 + ABZR86_RS13595 0.39 +0.2 3,042,622 - ABZR86_RS13595 0.39 -0.8 3,042,622 - ABZR86_RS13595 0.39 +1.0 3,042,622 - ABZR86_RS13595 0.39 -1.6 3,042,622 - ABZR86_RS13595 0.39 +0.1 3,042,622 - ABZR86_RS13595 0.39 -0.3 3,042,622 - ABZR86_RS13595 0.39 -0.0 3,042,665 + ABZR86_RS13595 0.47 -0.4 3,042,665 + ABZR86_RS13595 0.47 +1.0 3,042,666 - ABZR86_RS13595 0.47 +0.7 3,042,666 - ABZR86_RS13595 0.47 +0.2 3,042,753 + ABZR86_RS13595 0.63 +0.6 3,042,816 + ABZR86_RS13595 0.74 +0.7 3,043,031 + +0.3 3,043,031 + +0.2 3,043,031 + +0.3 3,043,031 + -0.1 3,043,031 + +0.1 3,043,031 + +1.1 3,043,031 + -1.2 3,043,032 - -0.4 3,043,032 - -1.4 3,043,032 - +0.5 3,043,032 - +0.6 3,043,032 - +0.5 3,043,521 - -1.8 3,043,535 - -1.2 3,043,573 - -0.1 3,043,573 - +1.1 3,043,573 - -0.8 3,043,573 - +0.1 3,043,576 - -0.5 3,043,576 - +1.0 3,043,576 - -0.7 3,043,583 - -1.2
Or see this region's nucleotide sequence