Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10680

Experiment: Spectinomycin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10675 and ABZR86_RS10680 are separated by 178 nucleotidesABZR86_RS10680 and ABZR86_RS10685 are separated by 408 nucleotides ABZR86_RS10675: ABZR86_RS10675 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 2,371,672 to 2,372,763 _RS10675 ABZR86_RS10680: ABZR86_RS10680 - riboflavin synthase, at 2,372,942 to 2,373,586 _RS10680 ABZR86_RS10685: ABZR86_RS10685 - LysR family transcriptional regulator, at 2,373,995 to 2,374,897 _RS10685 Position (kb) 2372 2373 2374Strain fitness (log2 ratio) -1 0 1 2at 2372.786 kb on + strandat 2372.789 kb on + strandat 2373.903 kb on + strandat 2373.941 kb on - strandat 2373.941 kb on - strandat 2373.996 kb on + strandat 2373.996 kb on + strandat 2373.996 kb on + strandat 2373.996 kb on + strandat 2373.996 kb on + strandat 2374.149 kb on + strand, within ABZR86_RS10685at 2374.149 kb on + strand, within ABZR86_RS10685at 2374.149 kb on + strand, within ABZR86_RS10685at 2374.149 kb on + strand, within ABZR86_RS10685at 2374.150 kb on - strand, within ABZR86_RS10685at 2374.150 kb on - strand, within ABZR86_RS10685at 2374.150 kb on - strand, within ABZR86_RS10685at 2374.150 kb on - strand, within ABZR86_RS10685at 2374.150 kb on - strand, within ABZR86_RS10685at 2374.363 kb on - strand, within ABZR86_RS10685at 2374.384 kb on - strand, within ABZR86_RS10685at 2374.384 kb on - strand, within ABZR86_RS10685at 2374.384 kb on - strand, within ABZR86_RS10685at 2374.384 kb on - strand, within ABZR86_RS10685at 2374.482 kb on + strand, within ABZR86_RS10685at 2374.482 kb on + strand, within ABZR86_RS10685at 2374.482 kb on + strand, within ABZR86_RS10685at 2374.482 kb on + strand, within ABZR86_RS10685at 2374.483 kb on - strand, within ABZR86_RS10685at 2374.483 kb on - strand, within ABZR86_RS10685at 2374.483 kb on - strand, within ABZR86_RS10685at 2374.495 kb on - strand, within ABZR86_RS10685at 2374.495 kb on - strand, within ABZR86_RS10685at 2374.497 kb on - strand, within ABZR86_RS10685at 2374.569 kb on + strand, within ABZR86_RS10685

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml
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2,372,786 + -0.4
2,372,789 + +0.3
2,373,903 + -0.6
2,373,941 - +2.0
2,373,941 - -0.9
2,373,996 + +0.7
2,373,996 + -1.7
2,373,996 + -0.1
2,373,996 + +0.4
2,373,996 + +0.8
2,374,149 + ABZR86_RS10685 0.17 -0.9
2,374,149 + ABZR86_RS10685 0.17 -0.2
2,374,149 + ABZR86_RS10685 0.17 -0.3
2,374,149 + ABZR86_RS10685 0.17 +0.6
2,374,150 - ABZR86_RS10685 0.17 -0.7
2,374,150 - ABZR86_RS10685 0.17 +0.2
2,374,150 - ABZR86_RS10685 0.17 +2.5
2,374,150 - ABZR86_RS10685 0.17 +1.5
2,374,150 - ABZR86_RS10685 0.17 +0.6
2,374,363 - ABZR86_RS10685 0.41 -0.2
2,374,384 - ABZR86_RS10685 0.43 +0.3
2,374,384 - ABZR86_RS10685 0.43 +0.2
2,374,384 - ABZR86_RS10685 0.43 +0.6
2,374,384 - ABZR86_RS10685 0.43 -0.8
2,374,482 + ABZR86_RS10685 0.54 +0.7
2,374,482 + ABZR86_RS10685 0.54 -0.8
2,374,482 + ABZR86_RS10685 0.54 -1.1
2,374,482 + ABZR86_RS10685 0.54 +0.8
2,374,483 - ABZR86_RS10685 0.54 -0.9
2,374,483 - ABZR86_RS10685 0.54 +1.0
2,374,483 - ABZR86_RS10685 0.54 +0.3
2,374,495 - ABZR86_RS10685 0.55 +0.2
2,374,495 - ABZR86_RS10685 0.55 -0.3
2,374,497 - ABZR86_RS10685 0.56 +1.2
2,374,569 + ABZR86_RS10685 0.64 +0.4

Or see this region's nucleotide sequence