Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05240 and ABZR86_RS05245 are separated by 211 nucleotides ABZR86_RS05245 and ABZR86_RS05250 overlap by 32 nucleotides ABZR86_RS05250 and ABZR86_RS05255 are separated by 192 nucleotides ABZR86_RS05255 and ABZR86_RS05260 are separated by 113 nucleotides
ABZR86_RS05240: ABZR86_RS05240 - hypothetical protein, at 1,180,230 to 1,180,463
_RS05240
ABZR86_RS05245: ABZR86_RS05245 - cupin domain-containing protein, at 1,180,675 to 1,181,418
_RS05245
ABZR86_RS05250: ABZR86_RS05250 - hypothetical protein, at 1,181,387 to 1,182,085
_RS05250
ABZR86_RS05255: ABZR86_RS05255 - nuclear transport factor 2 family protein, at 1,182,278 to 1,182,772
_RS05255
ABZR86_RS05260: ABZR86_RS05260 - hypothetical protein, at 1,182,886 to 1,183,719
_RS05260
Position (kb)
1181
1182
1183 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1180.498 kb on + strand at 1180.498 kb on + strand at 1180.499 kb on - strand at 1180.506 kb on + strand at 1180.602 kb on + strand at 1180.645 kb on - strand at 1180.662 kb on + strand at 1180.662 kb on + strand at 1180.663 kb on - strand at 1180.688 kb on + strand at 1180.825 kb on + strand, within ABZR86_RS05245 at 1180.826 kb on - strand, within ABZR86_RS05245 at 1180.873 kb on + strand, within ABZR86_RS05245 at 1180.873 kb on + strand, within ABZR86_RS05245 at 1180.874 kb on - strand, within ABZR86_RS05245 at 1180.888 kb on - strand, within ABZR86_RS05245 at 1180.888 kb on - strand, within ABZR86_RS05245 at 1180.888 kb on - strand, within ABZR86_RS05245 at 1180.951 kb on + strand, within ABZR86_RS05245 at 1180.951 kb on + strand, within ABZR86_RS05245 at 1180.952 kb on - strand, within ABZR86_RS05245 at 1181.068 kb on + strand, within ABZR86_RS05245 at 1181.068 kb on + strand, within ABZR86_RS05245 at 1181.068 kb on + strand, within ABZR86_RS05245 at 1181.068 kb on + strand, within ABZR86_RS05245 at 1181.068 kb on + strand, within ABZR86_RS05245 at 1181.069 kb on - strand, within ABZR86_RS05245 at 1181.069 kb on - strand, within ABZR86_RS05245 at 1181.069 kb on - strand, within ABZR86_RS05245 at 1181.069 kb on - strand, within ABZR86_RS05245 at 1181.069 kb on - strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.137 kb on + strand, within ABZR86_RS05245 at 1181.138 kb on - strand, within ABZR86_RS05245 at 1181.138 kb on - strand, within ABZR86_RS05245 at 1181.138 kb on - strand, within ABZR86_RS05245 at 1181.138 kb on - strand, within ABZR86_RS05245 at 1181.138 kb on - strand, within ABZR86_RS05245 at 1181.239 kb on - strand, within ABZR86_RS05245 at 1181.240 kb on - strand, within ABZR86_RS05245 at 1181.388 kb on + strand at 1181.388 kb on + strand at 1181.389 kb on - strand at 1181.389 kb on - strand at 1181.389 kb on - strand at 1181.389 kb on - strand at 1181.508 kb on + strand, within ABZR86_RS05250 at 1181.508 kb on + strand, within ABZR86_RS05250 at 1181.509 kb on - strand, within ABZR86_RS05250 at 1181.679 kb on + strand, within ABZR86_RS05250 at 1181.862 kb on + strand, within ABZR86_RS05250 at 1181.862 kb on + strand, within ABZR86_RS05250 at 1181.863 kb on - strand, within ABZR86_RS05250 at 1181.863 kb on - strand, within ABZR86_RS05250 at 1181.863 kb on - strand, within ABZR86_RS05250 at 1181.863 kb on - strand, within ABZR86_RS05250 at 1182.042 kb on + strand at 1182.065 kb on + strand at 1182.065 kb on + strand at 1182.105 kb on - strand at 1182.182 kb on + strand at 1182.182 kb on + strand at 1182.182 kb on + strand at 1182.182 kb on + strand at 1182.183 kb on - strand at 1182.183 kb on - strand at 1182.205 kb on + strand at 1182.205 kb on + strand at 1182.206 kb on - strand at 1182.206 kb on - strand at 1182.280 kb on - strand at 1182.280 kb on - strand at 1182.280 kb on - strand at 1182.280 kb on - strand at 1182.280 kb on - strand at 1182.312 kb on + strand at 1182.313 kb on - strand at 1182.589 kb on - strand, within ABZR86_RS05255 at 1182.622 kb on - strand, within ABZR86_RS05255 at 1182.840 kb on + strand at 1182.840 kb on + strand at 1182.840 kb on + strand at 1182.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 1,180,498 + +0.1 1,180,498 + -0.0 1,180,499 - +0.2 1,180,506 + -0.8 1,180,602 + -2.9 1,180,645 - -0.8 1,180,662 + +0.4 1,180,662 + -0.1 1,180,663 - +0.6 1,180,688 + +0.1 1,180,825 + ABZR86_RS05245 0.20 +0.3 1,180,826 - ABZR86_RS05245 0.20 +1.0 1,180,873 + ABZR86_RS05245 0.27 -0.3 1,180,873 + ABZR86_RS05245 0.27 -0.2 1,180,874 - ABZR86_RS05245 0.27 +0.2 1,180,888 - ABZR86_RS05245 0.29 -0.2 1,180,888 - ABZR86_RS05245 0.29 +0.2 1,180,888 - ABZR86_RS05245 0.29 -0.5 1,180,951 + ABZR86_RS05245 0.37 -0.8 1,180,951 + ABZR86_RS05245 0.37 +0.4 1,180,952 - ABZR86_RS05245 0.37 +0.5 1,181,068 + ABZR86_RS05245 0.53 +0.4 1,181,068 + ABZR86_RS05245 0.53 +0.2 1,181,068 + ABZR86_RS05245 0.53 +0.8 1,181,068 + ABZR86_RS05245 0.53 -0.8 1,181,068 + ABZR86_RS05245 0.53 -0.0 1,181,069 - ABZR86_RS05245 0.53 -0.7 1,181,069 - ABZR86_RS05245 0.53 -0.1 1,181,069 - ABZR86_RS05245 0.53 -1.2 1,181,069 - ABZR86_RS05245 0.53 -0.6 1,181,069 - ABZR86_RS05245 0.53 +0.4 1,181,137 + ABZR86_RS05245 0.62 -0.6 1,181,137 + ABZR86_RS05245 0.62 -0.2 1,181,137 + ABZR86_RS05245 0.62 -0.0 1,181,137 + ABZR86_RS05245 0.62 +1.3 1,181,137 + ABZR86_RS05245 0.62 +0.7 1,181,137 + ABZR86_RS05245 0.62 -0.5 1,181,138 - ABZR86_RS05245 0.62 +0.4 1,181,138 - ABZR86_RS05245 0.62 -0.0 1,181,138 - ABZR86_RS05245 0.62 -0.2 1,181,138 - ABZR86_RS05245 0.62 -1.2 1,181,138 - ABZR86_RS05245 0.62 +0.2 1,181,239 - ABZR86_RS05245 0.76 -0.0 1,181,240 - ABZR86_RS05245 0.76 +0.3 1,181,388 + +1.0 1,181,388 + +0.0 1,181,389 - -0.9 1,181,389 - +0.9 1,181,389 - -0.6 1,181,389 - -1.5 1,181,508 + ABZR86_RS05250 0.17 -1.0 1,181,508 + ABZR86_RS05250 0.17 -0.5 1,181,509 - ABZR86_RS05250 0.17 -0.4 1,181,679 + ABZR86_RS05250 0.42 +0.3 1,181,862 + ABZR86_RS05250 0.68 -0.2 1,181,862 + ABZR86_RS05250 0.68 -0.3 1,181,863 - ABZR86_RS05250 0.68 -0.5 1,181,863 - ABZR86_RS05250 0.68 +0.3 1,181,863 - ABZR86_RS05250 0.68 +0.9 1,181,863 - ABZR86_RS05250 0.68 -0.2 1,182,042 + +0.5 1,182,065 + +0.6 1,182,065 + -0.9 1,182,105 - -0.4 1,182,182 + -0.2 1,182,182 + -1.6 1,182,182 + -1.9 1,182,182 + +0.4 1,182,183 - +0.7 1,182,183 - -0.0 1,182,205 + +0.5 1,182,205 + -0.0 1,182,206 - -0.5 1,182,206 - -0.6 1,182,280 - +1.1 1,182,280 - -1.5 1,182,280 - -0.1 1,182,280 - +1.1 1,182,280 - -1.0 1,182,312 + +1.3 1,182,313 - +0.4 1,182,589 - ABZR86_RS05255 0.63 +1.0 1,182,622 - ABZR86_RS05255 0.69 -0.1 1,182,840 + -0.6 1,182,840 + +0.3 1,182,840 + +1.4 1,182,841 - -0.9
Or see this region's nucleotide sequence