Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03045

Experiment: Spectinomycin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03030 and ABZR86_RS03035 are separated by 59 nucleotidesABZR86_RS03035 and ABZR86_RS03040 are separated by 74 nucleotidesABZR86_RS03040 and ABZR86_RS03045 are separated by 29 nucleotidesABZR86_RS03045 and ABZR86_RS03050 overlap by 4 nucleotides ABZR86_RS03030: ABZR86_RS03030 - KGG domain-containing protein, at 620,272 to 620,472 _RS03030 ABZR86_RS03035: ABZR86_RS03035 - CBS domain-containing protein, at 620,532 to 620,966 _RS03035 ABZR86_RS03040: ABZR86_RS03040 - hypothetical protein, at 621,041 to 621,292 _RS03040 ABZR86_RS03045: ABZR86_RS03045 - hypothetical protein, at 621,322 to 621,630 _RS03045 ABZR86_RS03050: ABZR86_RS03050 - excinuclease ABC subunit UvrA, at 621,627 to 624,035 _RS03050 Position (kb) 621 622Strain fitness (log2 ratio) -2 -1 0 1at 620.848 kb on + strand, within ABZR86_RS03035at 621.628 kb on + strandat 621.628 kb on + strandat 621.685 kb on + strandat 621.685 kb on + strandat 621.685 kb on + strandat 621.685 kb on + strandat 621.940 kb on + strand, within ABZR86_RS03050at 621.940 kb on + strand, within ABZR86_RS03050at 621.940 kb on + strand, within ABZR86_RS03050at 621.940 kb on + strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 621.941 kb on - strand, within ABZR86_RS03050at 622.171 kb on + strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.172 kb on - strand, within ABZR86_RS03050at 622.254 kb on - strand, within ABZR86_RS03050at 622.255 kb on + strand, within ABZR86_RS03050at 622.255 kb on + strand, within ABZR86_RS03050at 622.255 kb on + strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.256 kb on - strand, within ABZR86_RS03050at 622.281 kb on - strand, within ABZR86_RS03050at 622.281 kb on - strand, within ABZR86_RS03050at 622.373 kb on + strand, within ABZR86_RS03050at 622.373 kb on + strand, within ABZR86_RS03050at 622.373 kb on + strand, within ABZR86_RS03050at 622.375 kb on + strand, within ABZR86_RS03050at 622.375 kb on + strand, within ABZR86_RS03050at 622.375 kb on + strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050at 622.376 kb on - strand, within ABZR86_RS03050

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml
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620,848 + ABZR86_RS03035 0.73 +1.1
621,628 + -0.3
621,628 + -0.2
621,685 + -0.7
621,685 + -0.2
621,685 + -0.5
621,685 + +0.1
621,940 + ABZR86_RS03050 0.13 -0.1
621,940 + ABZR86_RS03050 0.13 -0.1
621,940 + ABZR86_RS03050 0.13 -0.5
621,940 + ABZR86_RS03050 0.13 -0.7
621,941 - ABZR86_RS03050 0.13 +0.2
621,941 - ABZR86_RS03050 0.13 +0.0
621,941 - ABZR86_RS03050 0.13 +0.4
621,941 - ABZR86_RS03050 0.13 -0.7
621,941 - ABZR86_RS03050 0.13 -0.6
621,941 - ABZR86_RS03050 0.13 +0.6
622,171 + ABZR86_RS03050 0.23 -1.0
622,172 - ABZR86_RS03050 0.23 +0.4
622,172 - ABZR86_RS03050 0.23 -0.4
622,172 - ABZR86_RS03050 0.23 +0.6
622,172 - ABZR86_RS03050 0.23 -0.6
622,172 - ABZR86_RS03050 0.23 -0.8
622,172 - ABZR86_RS03050 0.23 -0.2
622,172 - ABZR86_RS03050 0.23 +0.1
622,172 - ABZR86_RS03050 0.23 -0.3
622,254 - ABZR86_RS03050 0.26 -0.2
622,255 + ABZR86_RS03050 0.26 +0.4
622,255 + ABZR86_RS03050 0.26 +0.4
622,255 + ABZR86_RS03050 0.26 -1.9
622,256 - ABZR86_RS03050 0.26 -0.1
622,256 - ABZR86_RS03050 0.26 -0.4
622,256 - ABZR86_RS03050 0.26 +0.4
622,256 - ABZR86_RS03050 0.26 -1.1
622,256 - ABZR86_RS03050 0.26 +1.1
622,256 - ABZR86_RS03050 0.26 -0.2
622,256 - ABZR86_RS03050 0.26 -2.5
622,256 - ABZR86_RS03050 0.26 -0.6
622,281 - ABZR86_RS03050 0.27 -1.7
622,281 - ABZR86_RS03050 0.27 +0.1
622,373 + ABZR86_RS03050 0.31 -0.1
622,373 + ABZR86_RS03050 0.31 -1.4
622,373 + ABZR86_RS03050 0.31 +0.5
622,375 + ABZR86_RS03050 0.31 -0.6
622,375 + ABZR86_RS03050 0.31 -0.0
622,375 + ABZR86_RS03050 0.31 -1.2
622,376 - ABZR86_RS03050 0.31 -1.6
622,376 - ABZR86_RS03050 0.31 -0.3
622,376 - ABZR86_RS03050 0.31 +0.6
622,376 - ABZR86_RS03050 0.31 -0.5
622,376 - ABZR86_RS03050 0.31 -0.0
622,376 - ABZR86_RS03050 0.31 +1.1
622,376 - ABZR86_RS03050 0.31 -0.6
622,376 - ABZR86_RS03050 0.31 -0.4
622,376 - ABZR86_RS03050 0.31 -0.4

Or see this region's nucleotide sequence