Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00580 and ABZR86_RS00585 are separated by 97 nucleotides ABZR86_RS00585 and ABZR86_RS00590 are separated by 130 nucleotides ABZR86_RS00590 and ABZR86_RS00595 are separated by 91 nucleotides
ABZR86_RS00580: ABZR86_RS00580 - protease HtpX, at 109,610 to 110,500
_RS00580
ABZR86_RS00585: ABZR86_RS00585 - molecular chaperone HtpG, at 110,598 to 112,460
_RS00585
ABZR86_RS00590: ABZR86_RS00590 - hypothetical protein, at 112,591 to 113,148
_RS00590
ABZR86_RS00595: ABZR86_RS00595 - NAD(P)/FAD-dependent oxidoreductase, at 113,240 to 114,382
_RS00595
Position (kb) 110
111
112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 109.636 kb on + strand at 109.636 kb on + strand at 109.636 kb on + strand at 109.637 kb on - strand at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 110.110 kb on + strand, within ABZR86_RS00580 at 110.111 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.550 kb on + strand at 110.550 kb on + strand at 110.551 kb on - strand at 110.551 kb on - strand at 110.668 kb on - strand at 110.976 kb on + strand, within ABZR86_RS00585 at 111.192 kb on + strand, within ABZR86_RS00585 at 111.324 kb on + strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.544 kb on - strand, within ABZR86_RS00585 at 111.544 kb on - strand, within ABZR86_RS00585 at 111.717 kb on + strand, within ABZR86_RS00585 at 111.718 kb on - strand, within ABZR86_RS00585 at 111.718 kb on - strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.850 kb on - strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.889 kb on - strand, within ABZR86_RS00585 at 111.889 kb on - strand, within ABZR86_RS00585 at 112.017 kb on + strand, within ABZR86_RS00585 at 112.018 kb on - strand, within ABZR86_RS00585 at 112.168 kb on + strand, within ABZR86_RS00585 at 112.168 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.216 kb on - strand, within ABZR86_RS00585 at 112.481 kb on - strand at 112.481 kb on - strand at 112.481 kb on - strand at 112.481 kb on - strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.527 kb on - strand at 112.527 kb on - strand at 112.527 kb on - strand at 112.718 kb on + strand, within ABZR86_RS00590 at 112.727 kb on + strand, within ABZR86_RS00590 at 112.727 kb on + strand, within ABZR86_RS00590 at 112.728 kb on - strand, within ABZR86_RS00590 at 112.728 kb on - strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.826 kb on + strand, within ABZR86_RS00590 at 112.826 kb on + strand, within ABZR86_RS00590 at 112.827 kb on - strand, within ABZR86_RS00590 at 112.827 kb on - strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 109,636 + +0.3 109,636 + -0.2 109,636 + -0.3 109,637 - +0.2 109,743 - ABZR86_RS00580 0.15 +0.1 109,743 - ABZR86_RS00580 0.15 -0.4 109,743 - ABZR86_RS00580 0.15 +0.1 109,743 - ABZR86_RS00580 0.15 +0.8 109,926 - ABZR86_RS00580 0.35 +0.7 109,926 - ABZR86_RS00580 0.35 -0.3 110,110 + ABZR86_RS00580 0.56 -1.9 110,111 - ABZR86_RS00580 0.56 -0.5 110,205 - ABZR86_RS00580 0.67 -0.3 110,205 - ABZR86_RS00580 0.67 +0.8 110,550 + -0.3 110,550 + +2.4 110,551 - -0.3 110,551 - +0.5 110,668 - +0.2 110,976 + ABZR86_RS00585 0.20 -0.7 111,192 + ABZR86_RS00585 0.32 +1.1 111,324 + ABZR86_RS00585 0.39 -0.7 111,325 - ABZR86_RS00585 0.39 +1.7 111,325 - ABZR86_RS00585 0.39 -1.1 111,336 + ABZR86_RS00585 0.40 +1.2 111,336 + ABZR86_RS00585 0.40 -0.3 111,336 + ABZR86_RS00585 0.40 +0.6 111,423 + ABZR86_RS00585 0.44 +0.2 111,423 + ABZR86_RS00585 0.44 +0.1 111,423 + ABZR86_RS00585 0.44 -0.3 111,423 + ABZR86_RS00585 0.44 -0.5 111,423 + ABZR86_RS00585 0.44 -0.5 111,424 - ABZR86_RS00585 0.44 +0.7 111,424 - ABZR86_RS00585 0.44 -0.7 111,424 - ABZR86_RS00585 0.44 +0.4 111,424 - ABZR86_RS00585 0.44 -0.8 111,424 - ABZR86_RS00585 0.44 +0.4 111,424 - ABZR86_RS00585 0.44 +0.3 111,424 - ABZR86_RS00585 0.44 -0.2 111,492 + ABZR86_RS00585 0.48 +0.0 111,492 + ABZR86_RS00585 0.48 +0.1 111,492 + ABZR86_RS00585 0.48 +0.4 111,492 + ABZR86_RS00585 0.48 +0.0 111,492 + ABZR86_RS00585 0.48 +0.5 111,492 + ABZR86_RS00585 0.48 +0.3 111,492 + ABZR86_RS00585 0.48 +0.2 111,493 - ABZR86_RS00585 0.48 -0.2 111,493 - ABZR86_RS00585 0.48 +0.9 111,493 - ABZR86_RS00585 0.48 -0.6 111,544 - ABZR86_RS00585 0.51 +0.8 111,544 - ABZR86_RS00585 0.51 -0.3 111,717 + ABZR86_RS00585 0.60 -0.1 111,718 - ABZR86_RS00585 0.60 -1.7 111,718 - ABZR86_RS00585 0.60 -0.4 111,849 + ABZR86_RS00585 0.67 +2.2 111,849 + ABZR86_RS00585 0.67 +0.9 111,849 + ABZR86_RS00585 0.67 +0.1 111,849 + ABZR86_RS00585 0.67 -0.1 111,849 + ABZR86_RS00585 0.67 +0.1 111,849 + ABZR86_RS00585 0.67 +0.9 111,849 + ABZR86_RS00585 0.67 -0.2 111,850 - ABZR86_RS00585 0.67 +0.4 111,888 + ABZR86_RS00585 0.69 -0.3 111,888 + ABZR86_RS00585 0.69 -0.3 111,888 + ABZR86_RS00585 0.69 -0.2 111,888 + ABZR86_RS00585 0.69 +1.0 111,889 - ABZR86_RS00585 0.69 -0.8 111,889 - ABZR86_RS00585 0.69 -0.5 112,017 + ABZR86_RS00585 0.76 +0.5 112,018 - ABZR86_RS00585 0.76 -0.5 112,168 + ABZR86_RS00585 0.84 -0.0 112,168 + ABZR86_RS00585 0.84 -0.2 112,215 + ABZR86_RS00585 0.87 +1.0 112,215 + ABZR86_RS00585 0.87 -0.6 112,215 + ABZR86_RS00585 0.87 -0.8 112,215 + ABZR86_RS00585 0.87 +0.5 112,216 - ABZR86_RS00585 0.87 +0.6 112,481 - +0.9 112,481 - +0.1 112,481 - -0.3 112,481 - -0.2 112,526 + -1.4 112,526 + +0.0 112,526 + +0.5 112,526 + -0.1 112,527 - +0.6 112,527 - +0.3 112,527 - -0.2 112,718 + ABZR86_RS00590 0.23 +0.1 112,727 + ABZR86_RS00590 0.24 +0.1 112,727 + ABZR86_RS00590 0.24 +0.1 112,728 - ABZR86_RS00590 0.25 -0.4 112,728 - ABZR86_RS00590 0.25 -0.1 112,731 + ABZR86_RS00590 0.25 +0.4 112,731 + ABZR86_RS00590 0.25 +0.4 112,731 + ABZR86_RS00590 0.25 -0.8 112,731 + ABZR86_RS00590 0.25 -0.3 112,731 + ABZR86_RS00590 0.25 +0.7 112,731 + ABZR86_RS00590 0.25 -0.1 112,731 + ABZR86_RS00590 0.25 +0.7 112,731 + ABZR86_RS00590 0.25 +0.7 112,731 + ABZR86_RS00590 0.25 +0.4 112,731 + ABZR86_RS00590 0.25 -0.2 112,732 - ABZR86_RS00590 0.25 -0.2 112,732 - ABZR86_RS00590 0.25 +0.4 112,732 - ABZR86_RS00590 0.25 +0.5 112,732 - ABZR86_RS00590 0.25 -0.1 112,732 - ABZR86_RS00590 0.25 -1.2 112,732 - ABZR86_RS00590 0.25 -1.4 112,732 - ABZR86_RS00590 0.25 -0.8 112,826 + ABZR86_RS00590 0.42 -0.1 112,826 + ABZR86_RS00590 0.42 -0.1 112,827 - ABZR86_RS00590 0.42 +0.8 112,827 - ABZR86_RS00590 0.42 -0.3 112,844 + ABZR86_RS00590 0.45 -0.0 112,844 + ABZR86_RS00590 0.45 +0.8 112,844 + ABZR86_RS00590 0.45 -0.9 112,845 - ABZR86_RS00590 0.46 +1.4 112,845 - ABZR86_RS00590 0.46 -0.3 112,845 - ABZR86_RS00590 0.46 -0.1 112,845 - ABZR86_RS00590 0.46 +0.9
Or see this region's nucleotide sequence