Experiment: Spectinomycin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00050 and ABZR86_RS00055 are separated by 84 nucleotides ABZR86_RS00055 and ABZR86_RS00060 overlap by 4 nucleotides
ABZR86_RS00050: ABZR86_RS00050 - AraC family transcriptional regulator, at 10,400 to 11,257
_RS00050
ABZR86_RS00055: ABZR86_RS00055 - M50 family metallopeptidase, at 11,342 to 12,484
_RS00055
ABZR86_RS00060: ABZR86_RS00060 - hypothetical protein, at 12,481 to 13,551
_RS00060
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.364 kb on - strand at 10.394 kb on - strand at 10.394 kb on - strand at 10.607 kb on + strand, within ABZR86_RS00050 at 11.126 kb on - strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050 at 11.472 kb on + strand, within ABZR86_RS00055 at 11.472 kb on + strand, within ABZR86_RS00055 at 11.495 kb on + strand, within ABZR86_RS00055 at 11.657 kb on + strand, within ABZR86_RS00055 at 11.657 kb on + strand, within ABZR86_RS00055 at 11.669 kb on + strand, within ABZR86_RS00055 at 11.670 kb on - strand, within ABZR86_RS00055 at 11.921 kb on + strand, within ABZR86_RS00055 at 11.921 kb on + strand, within ABZR86_RS00055 at 11.922 kb on - strand, within ABZR86_RS00055 at 11.922 kb on - strand, within ABZR86_RS00055 at 11.925 kb on + strand, within ABZR86_RS00055 at 11.925 kb on + strand, within ABZR86_RS00055 at 11.926 kb on - strand, within ABZR86_RS00055 at 11.926 kb on - strand, within ABZR86_RS00055 at 11.926 kb on - strand, within ABZR86_RS00055 at 12.051 kb on - strand, within ABZR86_RS00055 at 12.269 kb on + strand, within ABZR86_RS00055 at 12.269 kb on + strand, within ABZR86_RS00055 at 12.270 kb on - strand, within ABZR86_RS00055 at 12.270 kb on - strand, within ABZR86_RS00055 at 12.270 kb on - strand, within ABZR86_RS00055 at 12.270 kb on - strand, within ABZR86_RS00055 at 12.270 kb on - strand, within ABZR86_RS00055 at 12.447 kb on + strand at 12.448 kb on - strand at 12.448 kb on - strand at 12.647 kb on - strand, within ABZR86_RS00060 at 13.148 kb on + strand, within ABZR86_RS00060 at 13.148 kb on + strand, within ABZR86_RS00060 at 13.148 kb on + strand, within ABZR86_RS00060 at 13.148 kb on + strand, within ABZR86_RS00060
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.04 mg/ml remove 10,364 - -2.2 10,394 - +0.4 10,394 - -0.4 10,607 + ABZR86_RS00050 0.24 -0.5 11,126 - ABZR86_RS00050 0.85 +0.2 11,131 + ABZR86_RS00050 0.85 -0.1 11,131 + ABZR86_RS00050 0.85 -0.5 11,131 + ABZR86_RS00050 0.85 +0.8 11,132 - ABZR86_RS00050 0.85 +0.5 11,132 - ABZR86_RS00050 0.85 +0.3 11,472 + ABZR86_RS00055 0.11 +0.6 11,472 + ABZR86_RS00055 0.11 -0.9 11,495 + ABZR86_RS00055 0.13 +0.6 11,657 + ABZR86_RS00055 0.28 -0.4 11,657 + ABZR86_RS00055 0.28 +0.1 11,669 + ABZR86_RS00055 0.29 -1.1 11,670 - ABZR86_RS00055 0.29 -1.8 11,921 + ABZR86_RS00055 0.51 -1.5 11,921 + ABZR86_RS00055 0.51 -0.9 11,922 - ABZR86_RS00055 0.51 +0.6 11,922 - ABZR86_RS00055 0.51 +0.3 11,925 + ABZR86_RS00055 0.51 +0.1 11,925 + ABZR86_RS00055 0.51 +0.9 11,926 - ABZR86_RS00055 0.51 +0.2 11,926 - ABZR86_RS00055 0.51 -0.2 11,926 - ABZR86_RS00055 0.51 +0.0 12,051 - ABZR86_RS00055 0.62 +1.9 12,269 + ABZR86_RS00055 0.81 +1.3 12,269 + ABZR86_RS00055 0.81 +0.2 12,270 - ABZR86_RS00055 0.81 -0.6 12,270 - ABZR86_RS00055 0.81 -0.5 12,270 - ABZR86_RS00055 0.81 +1.3 12,270 - ABZR86_RS00055 0.81 +0.8 12,270 - ABZR86_RS00055 0.81 -1.1 12,447 + +0.8 12,448 - -0.4 12,448 - -0.6 12,647 - ABZR86_RS00060 0.15 +0.3 13,148 + ABZR86_RS00060 0.62 -0.6 13,148 + ABZR86_RS00060 0.62 -1.2 13,148 + ABZR86_RS00060 0.62 -0.3 13,148 + ABZR86_RS00060 0.62 +0.8
Or see this region's nucleotide sequence