Strain Fitness in Sinorhizobium meliloti 1021 around SMc03808

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03807 and SMc03808 are separated by 328 nucleotidesSMc03808 and SMc03809 are separated by 135 nucleotides SMc03807: SMc03807 - ammonium transporter, at 3,471,607 to 3,472,962 SMc03807 SMc03808: SMc03808 - cell division transmembrane protein, at 3,473,291 to 3,475,936 SMc03808 SMc03809: SMc03809 - hypothetical protein, at 3,476,072 to 3,476,734 SMc03809 Position (kb) 3473 3474 3475 3476Strain fitness (log2 ratio) -2 -1 0 1 2at 3472.625 kb on - strand, within SMc03807at 3472.660 kb on + strand, within SMc03807at 3472.661 kb on - strand, within SMc03807at 3472.763 kb on - strand, within SMc03807at 3472.858 kb on + strandat 3472.859 kb on - strandat 3473.065 kb on + strandat 3473.066 kb on - strandat 3473.066 kb on - strandat 3473.117 kb on + strandat 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.899 kb on + strandat 3476.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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3,472,625 - SMc03807 0.75 -2.2
3,472,660 + SMc03807 0.78 -0.3
3,472,661 - SMc03807 0.78 -0.8
3,472,763 - SMc03807 0.85 +0.4
3,472,858 + +1.0
3,472,859 - -2.3
3,473,065 + -0.3
3,473,066 - +0.7
3,473,066 - +2.0
3,473,117 + -0.3
3,475,819 + +0.2
3,475,819 + -0.4
3,475,819 + -0.3
3,475,899 + -1.0
3,476,810 - +0.1

Or see this region's nucleotide sequence