Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03003 and SMc03004 are separated by 706 nucleotides SMc03004 and SMc03005 are separated by 25 nucleotides SMc03005 and SMc03006 are separated by 3 nucleotides SMc03006 and SMc03007 are separated by 20 nucleotides
SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) <small>(from data)</small>, at 700,077 to 701,465
SMc03003
SMc03004: SMc03004 - chemoreceptor (methyl-accepting chemotaxis protein), at 702,172 to 703,773
SMc03004
SMc03005: SMc03005 - hypothetical protein, at 703,799 to 704,092
SMc03005
SMc03006: SMc03006 - chemotaxis regulator protein, at 704,096 to 704,461
SMc03006
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
Position (kb) 702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 701.253 kb on + strand, within SMc03003 at 701.254 kb on - strand, within SMc03003 at 701.412 kb on + strand at 701.412 kb on + strand at 701.413 kb on - strand at 701.463 kb on + strand at 701.569 kb on + strand at 701.651 kb on - strand at 701.663 kb on + strand at 701.663 kb on + strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.722 kb on + strand at 701.722 kb on + strand at 701.723 kb on - strand at 701.762 kb on + strand at 701.786 kb on + strand at 701.787 kb on - strand at 701.800 kb on + strand at 702.454 kb on + strand, within SMc03004 at 702.455 kb on - strand, within SMc03004 at 702.552 kb on + strand, within SMc03004 at 702.842 kb on - strand, within SMc03004 at 703.443 kb on - strand, within SMc03004 at 703.452 kb on - strand, within SMc03004 at 703.694 kb on + strand at 703.695 kb on - strand at 703.775 kb on + strand at 703.776 kb on - strand at 703.776 kb on - strand at 704.225 kb on - strand, within SMc03006 at 704.488 kb on - strand at 704.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 701,253 + SMc03003 0.85 +0.9 701,254 - SMc03003 0.85 -1.8 701,412 + -0.7 701,412 + -0.6 701,413 - -0.6 701,463 + -1.1 701,569 + -1.8 701,651 - +0.8 701,663 + +0.4 701,663 + +0.1 701,664 - -1.7 701,664 - +0.2 701,664 - -1.2 701,722 + +0.9 701,722 + +0.4 701,723 - +1.7 701,762 + +0.0 701,786 + +0.8 701,787 - -0.6 701,800 + -0.4 702,454 + SMc03004 0.18 -0.7 702,455 - SMc03004 0.18 -2.1 702,552 + SMc03004 0.24 -0.3 702,842 - SMc03004 0.42 +0.3 703,443 - SMc03004 0.79 -3.7 703,452 - SMc03004 0.80 +0.6 703,694 + -1.2 703,695 - -3.3 703,775 + +0.1 703,776 - -2.5 703,776 - +0.8 704,225 - SMc03006 0.35 +0.6 704,488 - -0.5 704,488 - -1.3
Or see this region's nucleotide sequence