Strain Fitness in Sinorhizobium meliloti 1021 around SMc02876

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02875 and SMc02876 overlap by 4 nucleotidesSMc02876 and SMc02877 are separated by 93 nucleotides SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data), at 231,331 to 232,215 SMc02875 SMc02876: SMc02876 - transcriptional regulator, at 232,212 to 232,976 SMc02876 SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092 SMc02877 Position (kb) 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.250 kb on + strandat 231.386 kb on + strandat 231.438 kb on + strand, within SMc02875at 231.445 kb on - strand, within SMc02875at 231.473 kb on + strand, within SMc02875at 231.586 kb on + strand, within SMc02875at 231.706 kb on + strand, within SMc02875at 231.706 kb on + strand, within SMc02875at 231.706 kb on + strand, within SMc02875at 231.707 kb on - strand, within SMc02875at 231.707 kb on - strand, within SMc02875at 231.736 kb on + strand, within SMc02875at 231.737 kb on - strand, within SMc02875at 231.833 kb on + strand, within SMc02875at 231.833 kb on + strand, within SMc02875at 231.833 kb on + strand, within SMc02875at 231.833 kb on + strand, within SMc02875at 231.833 kb on + strand, within SMc02875at 231.834 kb on - strand, within SMc02875at 232.938 kb on + strandat 233.020 kb on + strandat 233.048 kb on + strandat 233.528 kb on + strand, within SMc02877at 233.528 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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231,250 + -1.6
231,386 + +0.6
231,438 + SMc02875 0.12 +1.9
231,445 - SMc02875 0.13 +1.5
231,473 + SMc02875 0.16 +2.0
231,586 + SMc02875 0.29 +0.4
231,706 + SMc02875 0.42 -0.5
231,706 + SMc02875 0.42 -0.2
231,706 + SMc02875 0.42 +0.8
231,707 - SMc02875 0.42 -0.6
231,707 - SMc02875 0.42 -0.1
231,736 + SMc02875 0.46 +0.2
231,737 - SMc02875 0.46 -0.6
231,833 + SMc02875 0.57 -2.4
231,833 + SMc02875 0.57 -0.8
231,833 + SMc02875 0.57 +0.3
231,833 + SMc02875 0.57 +0.4
231,833 + SMc02875 0.57 -0.1
231,834 - SMc02875 0.57 -0.3
232,938 + -3.4
233,020 + +0.4
233,048 + -0.8
233,528 + SMc02877 0.45 +0.0
233,528 + SMc02877 0.45 -1.0
233,682 + SMc02877 0.60 +0.1
233,682 + SMc02877 0.60 +2.0

Or see this region's nucleotide sequence