Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02851 and SMc02852 are separated by 98 nucleotides SMc02852 and SMc02853 are separated by 363 nucleotides
SMc02851: SMc02851 - transcriptional regulator, at 201,956 to 202,399
SMc02851
SMc02852: SMc02852 - hypothetical protein, at 202,498 to 203,892
SMc02852
SMc02853: SMc02853 - hypothetical protein, at 204,256 to 205,203
SMc02853
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 201.542 kb on + strand at 201.543 kb on - strand at 201.545 kb on + strand at 201.546 kb on - strand at 201.546 kb on - strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.691 kb on + strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.692 kb on - strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.918 kb on + strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.919 kb on - strand at 201.951 kb on + strand at 201.952 kb on - strand at 201.987 kb on - strand at 202.027 kb on - strand, within SMc02851 at 202.086 kb on + strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.087 kb on - strand, within SMc02851 at 202.159 kb on + strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.160 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.234 kb on - strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.349 kb on + strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.350 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851 at 202.352 kb on - strand, within SMc02851 at 202.509 kb on + strand at 202.509 kb on + strand at 202.510 kb on - strand at 202.510 kb on - strand at 202.768 kb on + strand, within SMc02852 at 202.925 kb on - strand, within SMc02852 at 202.926 kb on + strand, within SMc02852 at 202.926 kb on + strand, within SMc02852 at 202.927 kb on - strand, within SMc02852 at 203.047 kb on + strand, within SMc02852 at 203.048 kb on - strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.304 kb on + strand, within SMc02852 at 203.305 kb on - strand, within SMc02852 at 203.305 kb on - strand, within SMc02852 at 203.446 kb on + strand, within SMc02852 at 203.449 kb on - strand, within SMc02852 at 203.449 kb on - strand, within SMc02852 at 203.557 kb on + strand, within SMc02852 at 203.557 kb on + strand, within SMc02852 at 203.558 kb on - strand, within SMc02852 at 203.890 kb on + strand at 203.891 kb on - strand at 203.912 kb on + strand at 203.984 kb on - strand at 204.112 kb on + strand at 204.113 kb on - strand at 204.274 kb on + strand at 204.274 kb on + strand at 204.275 kb on - strand at 204.523 kb on + strand, within SMc02853 at 204.524 kb on - strand, within SMc02853 at 204.839 kb on + strand, within SMc02853 at 204.839 kb on + strand, within SMc02853
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 201,542 + +1.2 201,543 - -0.1 201,545 + -0.1 201,546 - -0.1 201,546 - -0.1 201,691 + -0.0 201,691 + +0.6 201,691 + -1.0 201,692 - -0.2 201,692 - -0.3 201,692 - -1.3 201,918 + +0.0 201,918 + -1.9 201,918 + -2.5 201,919 - +0.1 201,919 - +0.1 201,919 - -0.2 201,951 + +0.6 201,952 - -1.4 201,987 - +0.4 202,027 - SMc02851 0.16 -1.4 202,086 + SMc02851 0.29 +0.6 202,087 - SMc02851 0.30 -1.3 202,087 - SMc02851 0.30 -0.0 202,087 - SMc02851 0.30 +0.6 202,159 + SMc02851 0.46 -1.6 202,160 - SMc02851 0.46 -0.1 202,160 - SMc02851 0.46 -1.3 202,234 - SMc02851 0.63 +1.4 202,234 - SMc02851 0.63 -0.5 202,349 + SMc02851 0.89 -0.2 202,349 + SMc02851 0.89 -0.2 202,350 - SMc02851 0.89 -0.5 202,350 - SMc02851 0.89 -0.3 202,350 - SMc02851 0.89 -0.9 202,350 - SMc02851 0.89 -0.2 202,352 - SMc02851 0.89 +1.1 202,352 - SMc02851 0.89 -0.1 202,509 + +0.0 202,509 + -0.6 202,510 - +0.5 202,510 - -1.5 202,768 + SMc02852 0.19 +0.6 202,925 - SMc02852 0.31 +0.1 202,926 + SMc02852 0.31 +0.1 202,926 + SMc02852 0.31 +1.5 202,927 - SMc02852 0.31 -0.1 203,047 + SMc02852 0.39 -1.5 203,048 - SMc02852 0.39 +0.6 203,304 + SMc02852 0.58 -0.8 203,304 + SMc02852 0.58 +1.5 203,304 + SMc02852 0.58 -0.1 203,305 - SMc02852 0.58 +0.1 203,305 - SMc02852 0.58 -0.2 203,446 + SMc02852 0.68 -1.7 203,449 - SMc02852 0.68 +1.5 203,449 - SMc02852 0.68 -0.6 203,557 + SMc02852 0.76 -0.3 203,557 + SMc02852 0.76 +0.8 203,558 - SMc02852 0.76 +2.3 203,890 + +0.5 203,891 - +0.0 203,912 + -0.1 203,984 - -3.0 204,112 + +0.8 204,113 - -2.1 204,274 + -0.4 204,274 + +3.5 204,275 - -2.1 204,523 + SMc02853 0.28 -1.8 204,524 - SMc02853 0.28 -0.6 204,839 + SMc02853 0.61 -0.8 204,839 + SMc02853 0.61 -1.8
Or see this region's nucleotide sequence