Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02712 and SMc02713 are separated by 193 nucleotides SMc02713 and SMc02714 are separated by 3 nucleotides SMc02714 and SMc02715 are separated by 122 nucleotides
SMc02712: SMc02712 - hypothetical protein, at 2,561,593 to 2,562,495
SMc02712
SMc02713: SMc02713 - RNA polymerase sigma-E factor (sigma-24) protein, at 2,562,689 to 2,563,204
SMc02713
SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035
SMc02714
SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586
SMc02715
Position (kb)
2562
2563
2564 Strain fitness (log2 ratio)
-2
-1
0
1 at 2562.879 kb on - strand, within SMc02713 at 2563.002 kb on - strand, within SMc02713 at 2563.228 kb on - strand at 2563.253 kb on + strand at 2563.416 kb on + strand, within SMc02714 at 2564.086 kb on + strand at 2564.086 kb on + strand at 2564.087 kb on - strand at 2564.087 kb on - strand at 2564.106 kb on + strand at 2564.107 kb on - strand at 2564.159 kb on + strand at 2564.195 kb on + strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 2,562,879 - SMc02713 0.37 -2.4 2,563,002 - SMc02713 0.61 -2.6 2,563,228 - +0.3 2,563,253 + -0.6 2,563,416 + SMc02714 0.25 -0.0 2,564,086 + -0.4 2,564,086 + -0.2 2,564,087 - -0.6 2,564,087 - +0.1 2,564,106 + -0.2 2,564,107 - +0.0 2,564,159 + +1.3 2,564,195 + -0.3 2,564,196 - +0.9 2,564,196 - +0.3 2,564,196 - +0.5
Or see this region's nucleotide sequence