Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02372 and SMc02373 are separated by 264 nucleotides SMc02373 and SMc02374 are separated by 37 nucleotides SMc02374 and SMc02375 are separated by 138 nucleotides
SMc02372: SMc02372 - transport transmembrane protein, at 1,125,728 to 1,127,017
SMc02372
SMc02373: SMc02373 - hypothetical protein, at 1,127,282 to 1,127,437
SMc02373
SMc02374: SMc02374 - hypothetical protein, at 1,127,475 to 1,127,651
SMc02374
SMc02375: SMc02375 - hypothetical protein, at 1,127,790 to 1,128,650
SMc02375
Position (kb)
1127
1128 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1126.429 kb on - strand, within SMc02372 at 1126.546 kb on + strand, within SMc02372 at 1126.546 kb on + strand, within SMc02372 at 1126.546 kb on + strand, within SMc02372 at 1126.546 kb on + strand, within SMc02372 at 1126.576 kb on - strand, within SMc02372 at 1126.576 kb on - strand, within SMc02372 at 1126.576 kb on - strand, within SMc02372 at 1126.615 kb on - strand, within SMc02372 at 1126.683 kb on + strand, within SMc02372 at 1126.683 kb on + strand, within SMc02372 at 1126.683 kb on + strand, within SMc02372 at 1126.684 kb on - strand, within SMc02372 at 1126.938 kb on + strand at 1126.938 kb on + strand at 1126.939 kb on - strand at 1126.939 kb on - strand at 1127.284 kb on - strand at 1127.355 kb on + strand, within SMc02373 at 1127.356 kb on - strand, within SMc02373
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,126,429 - SMc02372 0.54 -1.5 1,126,546 + SMc02372 0.63 -2.9 1,126,546 + SMc02372 0.63 +0.4 1,126,546 + SMc02372 0.63 -2.0 1,126,546 + SMc02372 0.63 -0.3 1,126,576 - SMc02372 0.66 +0.6 1,126,576 - SMc02372 0.66 -0.6 1,126,576 - SMc02372 0.66 +0.0 1,126,615 - SMc02372 0.69 +0.5 1,126,683 + SMc02372 0.74 -1.6 1,126,683 + SMc02372 0.74 -2.4 1,126,683 + SMc02372 0.74 +0.9 1,126,684 - SMc02372 0.74 -0.1 1,126,938 + -0.4 1,126,938 + -0.1 1,126,939 - -0.6 1,126,939 - -0.3 1,127,284 - -3.8 1,127,355 + SMc02373 0.47 -0.3 1,127,356 - SMc02373 0.47 -2.6
Or see this region's nucleotide sequence