Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02172 and SMc02171 are separated by 351 nucleotides SMc02171 and SMc02170 are separated by 281 nucleotides
SMc02172: SMc02172 - transcriptional regulator, at 522,311 to 523,540
SMc02172
SMc02171: SMc02171 - periplasmic binding ABC transporter protein, at 523,892 to 524,917
SMc02171
SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281
SMc02170
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.147 kb on - strand, within SMc02172 at 523.147 kb on - strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.370 kb on + strand, within SMc02172 at 523.447 kb on + strand at 523.448 kb on - strand at 523.449 kb on + strand at 523.603 kb on - strand at 523.607 kb on + strand at 523.891 kb on - strand at 524.078 kb on + strand, within SMc02171 at 524.078 kb on + strand, within SMc02171 at 524.079 kb on - strand, within SMc02171 at 524.079 kb on - strand, within SMc02171 at 524.691 kb on + strand, within SMc02171 at 524.732 kb on + strand, within SMc02171 at 524.801 kb on - strand, within SMc02171 at 525.272 kb on + strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.294 kb on + strand at 525.629 kb on - strand, within SMc02170 at 525.672 kb on + strand, within SMc02170 at 525.824 kb on - strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.896 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 523,147 - SMc02172 0.68 +2.4 523,147 - SMc02172 0.68 +2.0 523,150 + SMc02172 0.68 -1.5 523,150 + SMc02172 0.68 +2.4 523,150 + SMc02172 0.68 +2.7 523,150 + SMc02172 0.68 +2.3 523,150 + SMc02172 0.68 +2.0 523,150 + SMc02172 0.68 +2.3 523,151 - SMc02172 0.68 +2.6 523,151 - SMc02172 0.68 +2.0 523,151 - SMc02172 0.68 +3.2 523,151 - SMc02172 0.68 -1.9 523,151 - SMc02172 0.68 +2.2 523,370 + SMc02172 0.86 +2.6 523,447 + +3.5 523,448 - +2.7 523,449 + +2.6 523,603 - +0.6 523,607 + +2.9 523,891 - -1.4 524,078 + SMc02171 0.18 -2.3 524,078 + SMc02171 0.18 +0.0 524,079 - SMc02171 0.18 -2.3 524,079 - SMc02171 0.18 -0.9 524,691 + SMc02171 0.78 -3.2 524,732 + SMc02171 0.82 -2.3 524,801 - SMc02171 0.89 -3.1 525,272 + +1.5 525,273 - -0.4 525,273 - -0.6 525,273 - -0.1 525,294 + +0.6 525,629 - SMc02170 0.40 -0.4 525,672 + SMc02170 0.44 -0.4 525,824 - SMc02170 0.58 -0.5 525,865 + SMc02170 0.61 -0.0 525,865 + SMc02170 0.61 -0.8 525,895 + SMc02170 0.64 -3.3 525,895 + SMc02170 0.64 -0.7 525,895 + SMc02170 0.64 -0.5 525,895 + SMc02170 0.64 +1.9 525,896 - SMc02170 0.64 +0.1 525,902 - SMc02170 0.65 -0.1 525,902 - SMc02170 0.65 -1.1
Or see this region's nucleotide sequence