Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01162 and SMc01161 overlap by 9 nucleotides SMc01161 and SMc01160 are separated by 142 nucleotides SMc01160 and SMc01159 overlap by 11 nucleotides
SMc01162: SMc01162 - hypothetical protein, at 388,470 to 389,285
SMc01162
SMc01161: SMc01161 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 389,277 to 390,482
SMc01161
SMc01160: SMc01160 - hypothetical protein, at 390,625 to 391,083
SMc01160
SMc01159: SMc01159 - oxidoreductase, at 391,073 to 391,978
SMc01159
Position (kb) 389
390
391 Strain fitness (log2 ratio) -1
0
1
2
3 at 388.356 kb on - strand at 388.356 kb on - strand at 388.441 kb on - strand at 388.441 kb on - strand at 388.489 kb on - strand at 388.506 kb on + strand at 388.606 kb on + strand, within SMc01162 at 388.614 kb on + strand, within SMc01162 at 388.615 kb on - strand, within SMc01162 at 388.802 kb on + strand, within SMc01162 at 389.068 kb on - strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.098 kb on - strand, within SMc01162 at 389.128 kb on - strand, within SMc01162 at 390.526 kb on - strand at 390.651 kb on + strand at 390.762 kb on - strand, within SMc01160 at 390.878 kb on + strand, within SMc01160 at 391.121 kb on + strand at 391.121 kb on + strand at 391.482 kb on - strand, within SMc01159
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 388,356 - +0.3 388,356 - +1.8 388,441 - -0.8 388,441 - -0.4 388,489 - -0.2 388,506 + +0.2 388,606 + SMc01162 0.17 -0.1 388,614 + SMc01162 0.18 -0.6 388,615 - SMc01162 0.18 +0.1 388,802 + SMc01162 0.41 -0.2 389,068 - SMc01162 0.73 -0.3 389,097 + SMc01162 0.77 -0.3 389,097 + SMc01162 0.77 -1.0 389,098 - SMc01162 0.77 +1.4 389,128 - SMc01162 0.81 -0.4 390,526 - -1.6 390,651 + +0.2 390,762 - SMc01160 0.30 -0.0 390,878 + SMc01160 0.55 +0.1 391,121 + -0.7 391,121 + +2.9 391,482 - SMc01159 0.45 +0.0
Or see this region's nucleotide sequence