Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01167 and SMc01151 are separated by 123 nucleotides SMc01151 and SMc01150 overlap by 4 nucleotides SMc01150 and SMc01149 are separated by 74 nucleotides SMc01149 and SMc01148 are separated by 15 nucleotides
SMc01167: SMc01167 - chromosomal replication initiation protein, at 399,330 to 400,853
SMc01167
SMc01151: SMc01151 - hypothetical protein, at 400,977 to 401,351
SMc01151
SMc01150: SMc01150 - hypothetical protein, at 401,348 to 402,619
SMc01150
SMc01149: SMc01149 - hypothetical protein, at 402,694 to 403,176
SMc01149
SMc01148: SMc01148 - hypothetical protein, at 403,192 to 404,058
SMc01148
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.851 kb on + strand at 400.873 kb on + strand at 400.873 kb on + strand at 400.939 kb on + strand at 400.983 kb on + strand at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.221 kb on - strand, within SMc01151 at 401.326 kb on - strand at 401.326 kb on - strand at 401.420 kb on + strand at 401.467 kb on + strand at 401.752 kb on - strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.942 kb on + strand, within SMc01150 at 402.228 kb on + strand, within SMc01150 at 402.306 kb on - strand, within SMc01150 at 402.435 kb on - strand, within SMc01150 at 402.440 kb on + strand, within SMc01150 at 402.440 kb on + strand, within SMc01150 at 402.441 kb on - strand, within SMc01150 at 402.441 kb on - strand, within SMc01150 at 402.443 kb on + strand, within SMc01150 at 402.470 kb on + strand, within SMc01150 at 402.551 kb on + strand at 402.551 kb on + strand at 402.552 kb on - strand at 402.554 kb on - strand at 402.914 kb on - strand, within SMc01149 at 402.918 kb on + strand, within SMc01149 at 402.918 kb on + strand, within SMc01149 at 402.919 kb on - strand, within SMc01149 at 402.932 kb on - strand, within SMc01149 at 402.932 kb on - strand, within SMc01149 at 403.057 kb on + strand, within SMc01149 at 403.060 kb on - strand, within SMc01149 at 403.060 kb on - strand, within SMc01149 at 403.241 kb on + strand at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.591 kb on + strand, within SMc01148 at 403.592 kb on - strand, within SMc01148 at 403.592 kb on - strand, within SMc01148
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 400,851 + +2.7 400,873 + +1.0 400,873 + -0.1 400,939 + +0.5 400,983 + +0.4 401,082 + SMc01151 0.28 -0.1 401,082 + SMc01151 0.28 +0.4 401,082 + SMc01151 0.28 -1.2 401,083 - SMc01151 0.28 +0.7 401,083 - SMc01151 0.28 +0.8 401,083 - SMc01151 0.28 -2.1 401,220 + SMc01151 0.65 -1.7 401,220 + SMc01151 0.65 +0.1 401,221 - SMc01151 0.65 -0.9 401,326 - +0.1 401,326 - -0.2 401,420 + +0.6 401,467 + -1.1 401,752 - SMc01150 0.32 +0.1 401,921 + SMc01150 0.45 -1.8 401,921 + SMc01150 0.45 +2.1 401,921 + SMc01150 0.45 +0.3 401,921 + SMc01150 0.45 +1.2 401,921 + SMc01150 0.45 +0.6 401,921 + SMc01150 0.45 -0.2 401,921 + SMc01150 0.45 +0.9 401,922 - SMc01150 0.45 -0.3 401,922 - SMc01150 0.45 +0.7 401,922 - SMc01150 0.45 +0.8 401,922 - SMc01150 0.45 +0.1 401,942 + SMc01150 0.47 -0.8 402,228 + SMc01150 0.69 -0.4 402,306 - SMc01150 0.75 +2.1 402,435 - SMc01150 0.85 -0.7 402,440 + SMc01150 0.86 -0.3 402,440 + SMc01150 0.86 +0.1 402,441 - SMc01150 0.86 -0.3 402,441 - SMc01150 0.86 +0.4 402,443 + SMc01150 0.86 +1.1 402,470 + SMc01150 0.88 -0.1 402,551 + +0.7 402,551 + +0.6 402,552 - +1.2 402,554 - -1.2 402,914 - SMc01149 0.46 -1.1 402,918 + SMc01149 0.46 +0.2 402,918 + SMc01149 0.46 -0.3 402,919 - SMc01149 0.47 -2.5 402,932 - SMc01149 0.49 +0.6 402,932 - SMc01149 0.49 +1.1 403,057 + SMc01149 0.75 +1.7 403,060 - SMc01149 0.76 +2.2 403,060 - SMc01149 0.76 -0.6 403,241 + -0.1 403,591 + SMc01148 0.46 +0.8 403,591 + SMc01148 0.46 +0.5 403,591 + SMc01148 0.46 +0.7 403,592 - SMc01148 0.46 +0.5 403,592 - SMc01148 0.46 -0.5
Or see this region's nucleotide sequence