Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01142 and SMc01141 are separated by 339 nucleotides SMc01141 and SMc01140 are separated by 174 nucleotides SMc01140 and SMc01139 are separated by 278 nucleotides
SMc01142: SMc01142 - heat shock protein GrpE, at 408,808 to 409,434
SMc01142
SMc01141: SMc01141 - nitrogen regulatory IIA protein, at 409,774 to 410,238
SMc01141
SMc01140: SMc01140 - SIGMA54 modulation protein, at 410,413 to 410,985
SMc01140
SMc01139: SMc01139 - RNA polymerase factor sigma-54, at 411,264 to 412,808
SMc01139
Position (kb) 410
411 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 409.433 kb on - strand at 409.591 kb on - strand at 409.591 kb on - strand at 409.636 kb on - strand at 409.772 kb on - strand at 409.772 kb on - strand at 410.425 kb on - strand at 410.425 kb on - strand at 410.449 kb on - strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.139 kb on - strand at 411.238 kb on - strand at 411.527 kb on - strand, within SMc01139 at 411.562 kb on + strand, within SMc01139 at 411.562 kb on + strand, within SMc01139 at 411.563 kb on - strand, within SMc01139 at 411.563 kb on - strand, within SMc01139 at 411.813 kb on + strand, within SMc01139 at 411.826 kb on + strand, within SMc01139
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 409,433 - -0.1 409,591 - +2.1 409,591 - -0.4 409,636 - -1.3 409,772 - +0.4 409,772 - +0.1 410,425 - -0.2 410,425 - -1.9 410,449 - -0.6 411,112 + -0.7 411,112 + -1.5 411,112 + -3.9 411,113 - +0.4 411,113 - -0.0 411,139 - -0.2 411,238 - +1.0 411,527 - SMc01139 0.17 -2.9 411,562 + SMc01139 0.19 -4.3 411,562 + SMc01139 0.19 -3.7 411,563 - SMc01139 0.19 -3.9 411,563 - SMc01139 0.19 -2.9 411,813 + SMc01139 0.36 -2.3 411,826 + SMc01139 0.36 -3.8
Or see this region's nucleotide sequence