Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01116 and SMc01115 are separated by 49 nucleotides SMc01115 and SMc01114 are separated by 4 nucleotides
SMc01116: SMc01116 - acyltransferase transmembrane protein, at 438,442 to 439,320
SMc01116
SMc01115: SMc01115 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 439,370 to 440,788
SMc01115
SMc01114: SMc01114 - phoH-like protein, at 440,793 to 441,848
SMc01114
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 438.376 kb on + strand at 438.385 kb on - strand at 438.675 kb on + strand, within SMc01116 at 438.676 kb on - strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.142 kb on - strand, within SMc01116 at 439.169 kb on + strand, within SMc01116 at 439.170 kb on - strand, within SMc01116 at 439.170 kb on - strand, within SMc01116 at 439.359 kb on - strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.454 kb on + strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.455 kb on - strand at 439.475 kb on + strand at 439.476 kb on - strand at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.517 kb on + strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.518 kb on - strand, within SMc01115 at 439.601 kb on + strand, within SMc01115 at 439.601 kb on + strand, within SMc01115 at 439.602 kb on - strand, within SMc01115 at 439.744 kb on - strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.757 kb on + strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.758 kb on - strand, within SMc01115 at 439.820 kb on + strand, within SMc01115 at 439.821 kb on - strand, within SMc01115 at 439.945 kb on - strand, within SMc01115 at 439.949 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.194 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.455 kb on + strand, within SMc01115 at 440.456 kb on - strand, within SMc01115 at 440.557 kb on - strand, within SMc01115 at 441.071 kb on + strand, within SMc01114 at 441.124 kb on + strand, within SMc01114 at 441.222 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.423 kb on + strand, within SMc01114
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 438,376 + +0.7 438,385 - -0.3 438,675 + SMc01116 0.27 +0.0 438,676 - SMc01116 0.27 +0.2 439,027 + SMc01116 0.67 +0.9 439,027 + SMc01116 0.67 -0.5 439,141 + SMc01116 0.80 -1.4 439,141 + SMc01116 0.80 -1.0 439,142 - SMc01116 0.80 +1.6 439,169 + SMc01116 0.83 +0.1 439,170 - SMc01116 0.83 +0.3 439,170 - SMc01116 0.83 +1.2 439,359 - +0.5 439,454 + -1.1 439,454 + -1.7 439,454 + +0.5 439,454 + +0.0 439,454 + -0.6 439,454 + -1.1 439,454 + +0.2 439,455 - -0.4 439,455 - -0.5 439,455 - +0.2 439,455 - +0.2 439,455 - +0.4 439,475 + -0.7 439,476 - -3.4 439,517 + SMc01115 0.10 -0.6 439,517 + SMc01115 0.10 -0.8 439,517 + SMc01115 0.10 +2.0 439,517 + SMc01115 0.10 +0.3 439,517 + SMc01115 0.10 +0.1 439,518 - SMc01115 0.10 +0.3 439,518 - SMc01115 0.10 +3.2 439,518 - SMc01115 0.10 -1.0 439,601 + SMc01115 0.16 -1.1 439,601 + SMc01115 0.16 -0.5 439,602 - SMc01115 0.16 -0.1 439,744 - SMc01115 0.26 +0.3 439,757 + SMc01115 0.27 +0.2 439,757 + SMc01115 0.27 -1.1 439,757 + SMc01115 0.27 -0.7 439,757 + SMc01115 0.27 -1.6 439,757 + SMc01115 0.27 -1.7 439,758 - SMc01115 0.27 -0.6 439,758 - SMc01115 0.27 -0.5 439,758 - SMc01115 0.27 -0.2 439,820 + SMc01115 0.32 -0.1 439,821 - SMc01115 0.32 -0.0 439,945 - SMc01115 0.41 -0.2 439,949 + SMc01115 0.41 -0.2 440,155 + SMc01115 0.55 -1.4 440,155 + SMc01115 0.55 -1.3 440,155 + SMc01115 0.55 -0.2 440,156 - SMc01115 0.55 -0.0 440,156 - SMc01115 0.55 -2.4 440,193 + SMc01115 0.58 -0.5 440,193 + SMc01115 0.58 -0.2 440,194 - SMc01115 0.58 -0.7 440,229 - SMc01115 0.61 -1.7 440,229 - SMc01115 0.61 -0.6 440,435 + SMc01115 0.75 -3.2 440,435 + SMc01115 0.75 +0.2 440,435 + SMc01115 0.75 -1.9 440,435 + SMc01115 0.75 +0.6 440,436 - SMc01115 0.75 -0.8 440,436 - SMc01115 0.75 -0.9 440,436 - SMc01115 0.75 -0.9 440,436 - SMc01115 0.75 +1.0 440,436 - SMc01115 0.75 +0.2 440,455 + SMc01115 0.76 +1.8 440,456 - SMc01115 0.77 +2.0 440,557 - SMc01115 0.84 +1.1 441,071 + SMc01114 0.26 -0.6 441,124 + SMc01114 0.31 -3.3 441,222 + SMc01114 0.41 -0.5 441,288 + SMc01114 0.47 +0.7 441,288 + SMc01114 0.47 -0.3 441,288 + SMc01114 0.47 -1.6 441,423 + SMc01114 0.60 -1.8
Or see this region's nucleotide sequence