Strain Fitness in Sinorhizobium meliloti 1021 around SMc01068

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00995 and SMc01068 are separated by 671 nucleotidesSMc01068 and SMc00996 are separated by 75 nucleotides SMc00995: SMc00995 - hypothetical protein, at 1,520,699 to 1,521,133 SMc00995 SMc01068: SMc01068 - hypothetical protein, at 1,521,805 to 1,522,074 SMc01068 SMc00996: SMc00996 - hypothetical protein, at 1,522,150 to 1,523,652 SMc00996 Position (kb) 1521 1522 1523Strain fitness (log2 ratio) -1 0 1 2at 1520.842 kb on + strand, within SMc00995at 1520.842 kb on + strand, within SMc00995at 1520.843 kb on - strand, within SMc00995at 1520.891 kb on + strand, within SMc00995at 1521.029 kb on + strand, within SMc00995at 1521.129 kb on + strandat 1521.129 kb on + strandat 1521.130 kb on - strandat 1521.227 kb on - strandat 1521.227 kb on - strandat 1521.227 kb on - strandat 1521.227 kb on - strandat 1521.227 kb on - strandat 1521.607 kb on + strandat 1521.607 kb on + strandat 1521.607 kb on + strandat 1521.790 kb on - strandat 1521.790 kb on - strandat 1521.807 kb on - strandat 1522.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,520,842 + SMc00995 0.33 +0.4
1,520,842 + SMc00995 0.33 +1.4
1,520,843 - SMc00995 0.33 +1.9
1,520,891 + SMc00995 0.44 -0.6
1,521,029 + SMc00995 0.76 -0.0
1,521,129 + -0.6
1,521,129 + -0.1
1,521,130 - -1.5
1,521,227 - -0.2
1,521,227 - +2.0
1,521,227 - +0.7
1,521,227 - +0.4
1,521,227 - +0.5
1,521,607 + +0.3
1,521,607 + -0.5
1,521,607 + +0.8
1,521,790 - -1.1
1,521,790 - -0.1
1,521,807 - -0.8
1,522,087 - -0.5

Or see this region's nucleotide sequence