Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00984 and SMc00983 are separated by 65 nucleotides SMc00983 and SMc00982 are separated by 637 nucleotides
SMc00984: SMc00984 - hypothetical protein, at 952,806 to 953,780
SMc00984
SMc00983: SMc00983 - hypothetical protein, at 953,846 to 954,439
SMc00983
SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321
SMc00982
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 954.018 kb on + strand, within SMc00983 at 954.018 kb on + strand, within SMc00983 at 954.019 kb on - strand, within SMc00983 at 954.019 kb on - strand, within SMc00983 at 954.019 kb on - strand, within SMc00983 at 954.096 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.304 kb on - strand, within SMc00983 at 954.421 kb on - strand at 954.424 kb on - strand at 954.490 kb on + strand at 954.522 kb on - strand at 954.642 kb on - strand at 954.642 kb on - strand at 954.665 kb on + strand at 954.665 kb on + strand at 954.731 kb on - strand at 954.761 kb on + strand at 955.128 kb on + strand at 955.129 kb on - strand at 955.164 kb on + strand at 955.165 kb on - strand at 955.165 kb on - strand at 955.194 kb on + strand at 955.248 kb on + strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.411 kb on - strand, within SMc00982
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 954,018 + SMc00983 0.29 -0.7 954,018 + SMc00983 0.29 +1.8 954,019 - SMc00983 0.29 -0.2 954,019 - SMc00983 0.29 -2.0 954,019 - SMc00983 0.29 -0.7 954,096 + SMc00983 0.42 +2.9 954,159 + SMc00983 0.53 +0.3 954,159 + SMc00983 0.53 +0.4 954,304 - SMc00983 0.77 +0.5 954,421 - -1.1 954,424 - -0.1 954,490 + -2.5 954,522 - -0.9 954,642 - -1.5 954,642 - +0.1 954,665 + +0.1 954,665 + -1.9 954,731 - -0.7 954,761 + -1.5 955,128 + -1.9 955,129 - -0.6 955,164 + -3.5 955,165 - -2.0 955,165 - -2.3 955,194 + -3.2 955,248 + SMc00982 0.14 -0.7 955,411 - SMc00982 0.27 -1.6 955,411 - SMc00982 0.27 -3.1
Or see this region's nucleotide sequence