Strain Fitness in Sinorhizobium meliloti 1021 around SMc00976

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00977 and SMc00976 are separated by 9 nucleotidesSMc00976 and SMc00975 are separated by 256 nucleotides SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575 SMc00977 SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337 SMc00976 SMc00975: SMc00975 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 963,594 to 965,717 SMc00975 Position (kb) 962 963 964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 961.592 kb on + strand, within SMc00977at 961.758 kb on - strand, within SMc00977at 961.892 kb on + strand, within SMc00977at 962.085 kb on - strand, within SMc00977at 962.115 kb on - strand, within SMc00977at 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.408 kb on + strandat 962.621 kb on + strandat 962.687 kb on + strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 962.688 kb on - strand, within SMc00976at 963.335 kb on + strandat 963.394 kb on + strandat 963.394 kb on + strandat 963.395 kb on - strandat 963.395 kb on - strandat 963.421 kb on - strandat 963.421 kb on - strandat 963.705 kb on + strandat 963.706 kb on - strandat 963.706 kb on - strandat 963.707 kb on + strandat 963.922 kb on - strand, within SMc00975at 964.005 kb on + strand, within SMc00975at 964.051 kb on - strand, within SMc00975

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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961,592 + SMc00977 0.45 -0.2
961,758 - SMc00977 0.54 -0.4
961,892 + SMc00977 0.62 -1.3
962,085 - SMc00977 0.72 -3.0
962,115 - SMc00977 0.74 -3.8
962,408 + +1.7
962,408 + -0.3
962,408 + +2.6
962,408 + -0.7
962,621 + -2.0
962,687 + SMc00976 0.14 -1.9
962,688 - SMc00976 0.14 -0.1
962,688 - SMc00976 0.14 -1.8
963,335 + -1.8
963,394 + -1.9
963,394 + -0.1
963,395 - -0.8
963,395 - +3.3
963,421 - +0.5
963,421 - +2.3
963,705 + +0.6
963,706 - -0.3
963,706 - -0.2
963,707 + +0.1
963,922 - SMc00975 0.15 +0.7
964,005 + SMc00975 0.19 -2.3
964,051 - SMc00975 0.22 -0.5

Or see this region's nucleotide sequence