Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00972 and SMc00971 are separated by 196 nucleotides SMc00971 and SMc00970 are separated by 216 nucleotides SMc00970 and SMc00969 are separated by 3 nucleotides
SMc00972: SMc00972 - 1-deoxy-D-xylulose-5-phosphate synthase, at 967,850 to 969,787
SMc00972
SMc00971: SMc00971 - hypothetical protein, at 969,984 to 970,907
SMc00971
SMc00970: SMc00970 - exodeoxyribonuclease VII small subunit, at 971,124 to 971,375
SMc00970
SMc00969: SMc00969 - hypothetical protein, at 971,379 to 972,308
SMc00969
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.855 kb on - strand at 969.886 kb on - strand at 970.002 kb on + strand at 970.002 kb on + strand at 970.110 kb on - strand, within SMc00971 at 970.110 kb on - strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.204 kb on - strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.265 kb on - strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.334 kb on - strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.341 kb on - strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.347 kb on - strand, within SMc00971 at 970.433 kb on + strand, within SMc00971 at 970.434 kb on - strand, within SMc00971 at 970.660 kb on + strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 971.119 kb on + strand at 971.125 kb on + strand at 971.252 kb on - strand, within SMc00970 at 971.252 kb on - strand, within SMc00970 at 971.307 kb on - strand, within SMc00970 at 971.380 kb on + strand at 971.380 kb on + strand at 971.380 kb on + strand at 971.381 kb on - strand at 971.402 kb on + strand at 971.440 kb on + strand at 971.496 kb on + strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.497 kb on - strand, within SMc00969 at 971.740 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.748 kb on + strand, within SMc00969 at 971.749 kb on - strand, within SMc00969 at 971.889 kb on + strand at 971.890 kb on - strand, within SMc00969
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 969,855 - -0.0 969,886 - -0.8 970,002 + +0.6 970,002 + +0.7 970,110 - SMc00971 0.14 +0.3 970,110 - SMc00971 0.14 -2.4 970,203 + SMc00971 0.24 +0.7 970,203 + SMc00971 0.24 -0.6 970,204 - SMc00971 0.24 +1.8 970,264 + SMc00971 0.30 -1.0 970,264 + SMc00971 0.30 -0.9 970,265 - SMc00971 0.30 -0.9 970,333 + SMc00971 0.38 +0.2 970,333 + SMc00971 0.38 -0.7 970,333 + SMc00971 0.38 -1.1 970,333 + SMc00971 0.38 +0.5 970,334 - SMc00971 0.38 -0.1 970,340 + SMc00971 0.39 -2.4 970,340 + SMc00971 0.39 -1.1 970,340 + SMc00971 0.39 -0.2 970,341 - SMc00971 0.39 -0.3 970,346 + SMc00971 0.39 +1.1 970,346 + SMc00971 0.39 +0.7 970,347 - SMc00971 0.39 -0.6 970,433 + SMc00971 0.49 -1.2 970,434 - SMc00971 0.49 -0.2 970,660 + SMc00971 0.73 -1.0 970,661 - SMc00971 0.73 +0.3 970,661 - SMc00971 0.73 -1.1 971,119 + -0.5 971,125 + +0.3 971,252 - SMc00970 0.51 -1.2 971,252 - SMc00970 0.51 -0.0 971,307 - SMc00970 0.73 +2.4 971,380 + -1.0 971,380 + +1.0 971,380 + +0.4 971,381 - -0.9 971,402 + +3.7 971,440 + -0.5 971,496 + SMc00969 0.13 -0.4 971,497 - SMc00969 0.13 -1.1 971,497 - SMc00969 0.13 +0.1 971,740 + SMc00969 0.39 -0.7 971,748 + SMc00969 0.40 -0.3 971,748 + SMc00969 0.40 +0.8 971,749 - SMc00969 0.40 +1.7 971,889 + +0.1 971,890 - SMc00969 0.55 -1.0
Or see this region's nucleotide sequence