Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00400 and SMc00401 overlap by 1 nucleotides SMc00401 and SMc00402 are separated by 48 nucleotides
SMc00400: SMc00400 - signal peptide protein, at 349,932 to 351,059
SMc00400
SMc00401: SMc00401 - hypothetical protein, at 351,059 to 352,609
SMc00401
SMc00402: SMc00402 - signal peptide protein, at 352,658 to 353,938
SMc00402
Position (kb) 351
352
353 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 350.254 kb on + strand, within SMc00400 at 350.254 kb on + strand, within SMc00400 at 350.515 kb on + strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.707 kb on + strand, within SMc00400 at 351.016 kb on - strand at 351.159 kb on - strand at 351.649 kb on + strand, within SMc00401 at 351.927 kb on + strand, within SMc00401 at 351.928 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.054 kb on - strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.224 kb on + strand, within SMc00401 at 352.225 kb on - strand, within SMc00401 at 352.659 kb on + strand at 352.659 kb on + strand at 352.681 kb on + strand at 352.834 kb on - strand, within SMc00402 at 352.834 kb on - strand at 352.834 kb on - strand, within SMc00402 at 352.964 kb on - strand, within SMc00402 at 352.988 kb on - strand, within SMc00402 at 352.989 kb on + strand, within SMc00402 at 352.989 kb on + strand, within SMc00402 at 352.990 kb on - strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.001 kb on + strand, within SMc00402 at 353.002 kb on - strand, within SMc00402 at 353.130 kb on + strand, within SMc00402 at 353.278 kb on - strand, within SMc00402 at 353.571 kb on + strand, within SMc00402 at 353.572 kb on - strand, within SMc00402 at 353.586 kb on + strand, within SMc00402 at 353.587 kb on - strand, within SMc00402
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 350,254 + SMc00400 0.29 +0.5 350,254 + SMc00400 0.29 +0.8 350,515 + SMc00400 0.52 +3.1 350,516 - SMc00400 0.52 +0.9 350,516 - SMc00400 0.52 +1.4 350,570 - SMc00400 0.57 +0.9 350,570 - SMc00400 0.57 -0.2 350,707 + SMc00400 0.69 -0.3 351,016 - -0.1 351,159 - +0.6 351,649 + SMc00401 0.38 +0.6 351,927 + SMc00401 0.56 -0.6 351,928 - SMc00401 0.56 -0.2 351,986 - SMc00401 0.60 -0.3 351,986 - SMc00401 0.60 +0.1 351,987 + SMc00401 0.60 -2.0 351,987 + SMc00401 0.60 -0.4 351,987 + SMc00401 0.60 +0.7 351,987 + SMc00401 0.60 -0.0 351,987 + SMc00401 0.60 -0.9 351,988 - SMc00401 0.60 -0.0 351,988 - SMc00401 0.60 +0.2 351,988 - SMc00401 0.60 -1.2 352,053 + SMc00401 0.64 -0.3 352,053 + SMc00401 0.64 -2.0 352,054 - SMc00401 0.64 -1.6 352,224 + SMc00401 0.75 -2.7 352,224 + SMc00401 0.75 +0.1 352,224 + SMc00401 0.75 +0.3 352,225 - SMc00401 0.75 -0.5 352,659 + +3.7 352,659 + +0.6 352,681 + +0.4 352,834 - SMc00402 0.14 +0.5 352,834 - +2.0 352,834 - SMc00402 0.14 +0.4 352,964 - SMc00402 0.24 -1.9 352,988 - SMc00402 0.26 +0.2 352,989 + SMc00402 0.26 +0.9 352,989 + SMc00402 0.26 +0.9 352,990 - SMc00402 0.26 -0.4 353,001 + SMc00402 0.27 +0.0 353,001 + SMc00402 0.27 +0.7 353,001 + SMc00402 0.27 -2.4 353,002 - SMc00402 0.27 +0.4 353,130 + SMc00402 0.37 +0.8 353,278 - SMc00402 0.48 +0.1 353,571 + SMc00402 0.71 -4.2 353,572 - SMc00402 0.71 -0.3 353,586 + SMc00402 0.72 +0.6 353,587 - SMc00402 0.73 -2.5
Or see this region's nucleotide sequence