Strain Fitness in Sinorhizobium meliloti 1021 around SMa2369

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2367 and SMa2369 overlap by 4 nucleotidesSMa2369 and SMa2371 are separated by 21 nucleotides SMa2367: SMa2367 - ABC transporter permease, at 1,335,690 to 1,336,739 SMa2367 SMa2369: SMa2369 - ABC transporter permease, at 1,336,736 to 1,337,680 SMa2369 SMa2371: SMa2371 - cytosine deaminase, at 1,337,702 to 1,339,000 SMa2371 Position (kb) 1336 1337 1338Strain fitness (log2 ratio) -3 -2 -1 0 1at 1335.820 kb on - strand, within SMa2367at 1335.875 kb on - strand, within SMa2367at 1335.967 kb on - strand, within SMa2367at 1336.146 kb on - strand, within SMa2367at 1336.306 kb on + strand, within SMa2367at 1336.306 kb on + strand, within SMa2367at 1336.497 kb on + strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.498 kb on - strand, within SMa2367at 1336.646 kb on + strandat 1336.646 kb on + strandat 1336.647 kb on - strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.656 kb on + strandat 1336.657 kb on - strandat 1336.657 kb on - strandat 1336.660 kb on + strandat 1336.661 kb on - strandat 1336.723 kb on - strandat 1336.913 kb on + strand, within SMa2369at 1336.913 kb on + strand, within SMa2369at 1336.913 kb on + strand, within SMa2369at 1336.914 kb on - strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.066 kb on + strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.067 kb on - strand, within SMa2369at 1337.085 kb on + strand, within SMa2369at 1337.198 kb on + strand, within SMa2369at 1337.198 kb on + strand, within SMa2369at 1337.199 kb on - strand, within SMa2369at 1337.414 kb on - strand, within SMa2369at 1337.445 kb on + strand, within SMa2369at 1337.446 kb on - strand, within SMa2369at 1337.759 kb on - strandat 1337.802 kb on + strandat 1338.041 kb on + strand, within SMa2371at 1338.041 kb on + strand, within SMa2371at 1338.042 kb on - strand, within SMa2371at 1338.042 kb on - strand, within SMa2371at 1338.126 kb on - strand, within SMa2371at 1338.164 kb on + strand, within SMa2371at 1338.165 kb on - strand, within SMa2371at 1338.165 kb on - strand, within SMa2371at 1338.454 kb on + strand, within SMa2371at 1338.455 kb on + strand, within SMa2371at 1338.455 kb on + strand, within SMa2371at 1338.455 kb on + strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.456 kb on - strand, within SMa2371at 1338.458 kb on + strand, within SMa2371at 1338.459 kb on - strand, within SMa2371at 1338.459 kb on - strand, within SMa2371

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,335,820 - SMa2367 0.12 -0.1
1,335,875 - SMa2367 0.18 +0.3
1,335,967 - SMa2367 0.26 -0.8
1,336,146 - SMa2367 0.43 -0.4
1,336,306 + SMa2367 0.59 +0.9
1,336,306 + SMa2367 0.59 +0.2
1,336,497 + SMa2367 0.77 -1.3
1,336,498 - SMa2367 0.77 -1.7
1,336,498 - SMa2367 0.77 -0.1
1,336,498 - SMa2367 0.77 -0.7
1,336,646 + +0.3
1,336,646 + -0.6
1,336,647 - +0.1
1,336,656 + +0.7
1,336,656 + +0.2
1,336,656 + -0.2
1,336,656 + +0.6
1,336,657 - -0.3
1,336,657 - +0.9
1,336,660 + -0.2
1,336,661 - -0.5
1,336,723 - +0.1
1,336,913 + SMa2369 0.19 -2.3
1,336,913 + SMa2369 0.19 +1.7
1,336,913 + SMa2369 0.19 -2.8
1,336,914 - SMa2369 0.19 -0.7
1,337,066 + SMa2369 0.35 -0.3
1,337,066 + SMa2369 0.35 -0.7
1,337,066 + SMa2369 0.35 -0.1
1,337,067 - SMa2369 0.35 -0.4
1,337,067 - SMa2369 0.35 -0.9
1,337,067 - SMa2369 0.35 -0.6
1,337,085 + SMa2369 0.37 -0.8
1,337,198 + SMa2369 0.49 -1.0
1,337,198 + SMa2369 0.49 -0.3
1,337,199 - SMa2369 0.49 +0.5
1,337,414 - SMa2369 0.72 -2.4
1,337,445 + SMa2369 0.75 +0.7
1,337,446 - SMa2369 0.75 +1.2
1,337,759 - +0.3
1,337,802 + -0.9
1,338,041 + SMa2371 0.26 +1.7
1,338,041 + SMa2371 0.26 -2.3
1,338,042 - SMa2371 0.26 +0.3
1,338,042 - SMa2371 0.26 -0.7
1,338,126 - SMa2371 0.33 +0.9
1,338,164 + SMa2371 0.36 -0.6
1,338,165 - SMa2371 0.36 -0.8
1,338,165 - SMa2371 0.36 -0.5
1,338,454 + SMa2371 0.58 +0.4
1,338,455 + SMa2371 0.58 +1.1
1,338,455 + SMa2371 0.58 +0.2
1,338,455 + SMa2371 0.58 +0.7
1,338,456 - SMa2371 0.58 +0.1
1,338,456 - SMa2371 0.58 -1.1
1,338,456 - SMa2371 0.58 +1.0
1,338,456 - SMa2371 0.58 -0.1
1,338,456 - SMa2371 0.58 -0.1
1,338,456 - SMa2371 0.58 +0.7
1,338,458 + SMa2371 0.58 -0.4
1,338,459 - SMa2371 0.58 -1.4
1,338,459 - SMa2371 0.58 -0.0

Or see this region's nucleotide sequence