Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1742 and SMa1745 overlap by 4 nucleotides SMa1745 and SMa1746 overlap by 58 nucleotides
SMa1742: SMa1742 - Fe3+-siderophore ABC transporter permease, at 985,905 to 986,942
SMa1742
SMa1745: SMa1745 - ABC transporter permease, Fe3+-siderophore transport system, at 986,939 to 988,039
SMa1745
SMa1746: SMa1746 - ABC transporter substrate-binding protein, at 987,982 to 988,983
SMa1746
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.942 kb on + strand at 985.943 kb on - strand at 985.943 kb on - strand at 985.944 kb on + strand at 985.951 kb on + strand at 985.951 kb on + strand at 985.983 kb on + strand at 985.984 kb on - strand at 986.201 kb on + strand, within SMa1742 at 986.201 kb on + strand, within SMa1742 at 986.251 kb on - strand, within SMa1742 at 986.410 kb on + strand, within SMa1742 at 986.530 kb on - strand at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.574 kb on + strand, within SMa1742 at 986.575 kb on - strand, within SMa1742 at 986.575 kb on - strand, within SMa1742 at 986.649 kb on + strand, within SMa1742 at 986.689 kb on - strand, within SMa1742 at 986.776 kb on - strand, within SMa1742 at 986.776 kb on - strand, within SMa1742 at 987.014 kb on + strand at 987.015 kb on - strand at 987.015 kb on - strand at 987.015 kb on - strand at 987.150 kb on - strand, within SMa1745 at 987.332 kb on + strand, within SMa1745 at 987.333 kb on - strand, within SMa1745 at 987.409 kb on + strand, within SMa1745 at 987.588 kb on + strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.589 kb on - strand, within SMa1745 at 987.596 kb on + strand, within SMa1745 at 987.597 kb on - strand, within SMa1745 at 987.796 kb on + strand, within SMa1745 at 988.023 kb on - strand at 988.023 kb on - strand at 988.071 kb on + strand at 988.090 kb on + strand, within SMa1746 at 988.125 kb on + strand, within SMa1746 at 988.125 kb on + strand, within SMa1746 at 988.125 kb on + strand, within SMa1746 at 988.126 kb on - strand, within SMa1746 at 988.126 kb on - strand, within SMa1746 at 988.178 kb on + strand, within SMa1746 at 988.179 kb on - strand, within SMa1746 at 988.182 kb on + strand, within SMa1746 at 988.284 kb on + strand, within SMa1746 at 988.285 kb on - strand, within SMa1746 at 988.285 kb on - strand at 988.447 kb on + strand, within SMa1746 at 988.447 kb on + strand, within SMa1746 at 988.450 kb on - strand, within SMa1746 at 988.574 kb on + strand, within SMa1746 at 988.574 kb on + strand, within SMa1746 at 988.598 kb on + strand, within SMa1746 at 988.886 kb on + strand at 988.893 kb on + strand at 988.942 kb on + strand at 988.942 kb on + strand at 988.943 kb on - strand at 989.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 985,942 + -2.4 985,943 - +0.1 985,943 - -1.0 985,944 + -0.2 985,951 + -3.5 985,951 + -1.0 985,983 + +0.6 985,984 - -0.6 986,201 + SMa1742 0.29 -0.5 986,201 + SMa1742 0.29 +0.5 986,251 - SMa1742 0.33 +1.1 986,410 + SMa1742 0.49 +1.4 986,530 - -1.2 986,574 + SMa1742 0.64 -1.4 986,574 + SMa1742 0.64 -0.2 986,574 + SMa1742 0.64 -0.0 986,574 + SMa1742 0.64 -0.3 986,575 - SMa1742 0.65 +1.6 986,575 - SMa1742 0.65 +1.2 986,649 + SMa1742 0.72 -0.1 986,689 - SMa1742 0.76 +1.0 986,776 - SMa1742 0.84 -0.7 986,776 - SMa1742 0.84 -0.4 987,014 + -0.7 987,015 - -0.4 987,015 - -3.0 987,015 - -0.2 987,150 - SMa1745 0.19 +0.6 987,332 + SMa1745 0.36 +0.3 987,333 - SMa1745 0.36 -0.5 987,409 + SMa1745 0.43 +0.1 987,588 + SMa1745 0.59 +0.4 987,589 - SMa1745 0.59 -0.6 987,589 - SMa1745 0.59 +0.2 987,589 - SMa1745 0.59 -0.8 987,596 + SMa1745 0.60 +0.3 987,597 - SMa1745 0.60 +1.3 987,796 + SMa1745 0.78 +1.8 988,023 - +1.5 988,023 - +0.9 988,071 + +1.1 988,090 + SMa1746 0.11 -2.1 988,125 + SMa1746 0.14 +1.4 988,125 + SMa1746 0.14 +0.3 988,125 + SMa1746 0.14 +0.3 988,126 - SMa1746 0.14 -1.6 988,126 - SMa1746 0.14 +0.1 988,178 + SMa1746 0.20 -0.7 988,179 - SMa1746 0.20 +0.3 988,182 + SMa1746 0.20 -1.4 988,284 + SMa1746 0.30 +0.4 988,285 - SMa1746 0.30 -2.0 988,285 - +1.0 988,447 + SMa1746 0.46 +0.4 988,447 + SMa1746 0.46 +0.1 988,450 - SMa1746 0.47 -0.1 988,574 + SMa1746 0.59 -1.0 988,574 + SMa1746 0.59 -2.8 988,598 + SMa1746 0.61 +1.9 988,886 + -2.1 988,893 + +0.5 988,942 + +0.3 988,942 + +0.2 988,943 - +0.1 989,027 - +1.0
Or see this region's nucleotide sequence