Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1727 and SMa1729 are separated by 188 nucleotides SMa1729 and SMa1731 are separated by 193 nucleotides
SMa1727: SMa1727 - alpha/beta hydrolase, at 974,626 to 975,516
SMa1727
SMa1729: SMa1729 - ABC transporter substrate-binding protein, at 975,705 to 976,706
SMa1729
SMa1731: SMa1731 - betaine aldehyde dehydrogenase, at 976,900 to 978,369
SMa1731
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.748 kb on - strand, within SMa1727 at 974.776 kb on + strand, within SMa1727 at 974.776 kb on + strand, within SMa1727 at 974.827 kb on + strand, within SMa1727 at 974.828 kb on - strand, within SMa1727 at 974.835 kb on + strand, within SMa1727 at 974.867 kb on - strand, within SMa1727 at 974.938 kb on + strand, within SMa1727 at 974.938 kb on + strand, within SMa1727 at 974.939 kb on - strand, within SMa1727 at 974.944 kb on + strand, within SMa1727 at 974.944 kb on + strand, within SMa1727 at 974.945 kb on - strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.196 kb on + strand, within SMa1727 at 975.197 kb on - strand, within SMa1727 at 975.320 kb on + strand, within SMa1727 at 975.401 kb on + strand, within SMa1727 at 975.402 kb on - strand, within SMa1727 at 975.456 kb on + strand at 975.456 kb on + strand at 975.492 kb on - strand at 975.492 kb on - strand at 975.531 kb on + strand at 975.665 kb on + strand at 975.700 kb on - strand at 975.700 kb on - strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.721 kb on - strand at 975.785 kb on - strand at 975.831 kb on + strand, within SMa1729 at 975.831 kb on + strand, within SMa1729 at 975.877 kb on + strand, within SMa1729 at 975.935 kb on + strand, within SMa1729 at 976.045 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.079 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.465 kb on - strand, within SMa1729 at 976.778 kb on + strand at 976.843 kb on - strand at 976.901 kb on + strand at 976.938 kb on + strand at 976.940 kb on + strand at 977.027 kb on + strand at 977.028 kb on - strand at 977.028 kb on - strand at 977.073 kb on + strand, within SMa1731 at 977.074 kb on - strand, within SMa1731 at 977.102 kb on - strand, within SMa1731 at 977.227 kb on - strand, within SMa1731 at 977.297 kb on + strand, within SMa1731 at 977.297 kb on + strand, within SMa1731 at 977.327 kb on + strand, within SMa1731 at 977.328 kb on - strand, within SMa1731
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 974,748 - SMa1727 0.14 -0.1 974,776 + SMa1727 0.17 -0.6 974,776 + SMa1727 0.17 +0.7 974,827 + SMa1727 0.23 -0.9 974,828 - SMa1727 0.23 -0.3 974,835 + SMa1727 0.23 -1.7 974,867 - SMa1727 0.27 -0.5 974,938 + SMa1727 0.35 -3.1 974,938 + SMa1727 0.35 +0.9 974,939 - SMa1727 0.35 +1.1 974,944 + SMa1727 0.36 +0.2 974,944 + SMa1727 0.36 +0.5 974,945 - SMa1727 0.36 -0.8 975,141 + SMa1727 0.58 -0.5 975,141 + SMa1727 0.58 -1.2 975,141 + SMa1727 0.58 -1.4 975,196 + SMa1727 0.64 +0.1 975,197 - SMa1727 0.64 +0.3 975,320 + SMa1727 0.78 -1.4 975,401 + SMa1727 0.87 +0.6 975,402 - SMa1727 0.87 +0.7 975,456 + -0.1 975,456 + -0.0 975,492 - +0.2 975,492 - -0.1 975,531 + +0.2 975,665 + +0.4 975,700 - +0.2 975,700 - -0.4 975,720 + +1.3 975,720 + -0.0 975,720 + +0.2 975,720 + -0.4 975,721 - -0.6 975,785 - +0.3 975,831 + SMa1729 0.13 +0.1 975,831 + SMa1729 0.13 +0.2 975,877 + SMa1729 0.17 -0.6 975,935 + SMa1729 0.23 -0.2 976,045 + SMa1729 0.34 +0.1 976,075 + SMa1729 0.37 -1.6 976,075 + SMa1729 0.37 +0.5 976,079 - SMa1729 0.37 -0.7 976,340 - SMa1729 0.63 -0.4 976,340 - SMa1729 0.63 +1.3 976,351 + SMa1729 0.64 -0.2 976,351 + SMa1729 0.64 +1.3 976,351 + SMa1729 0.64 +0.0 976,352 - SMa1729 0.65 -0.9 976,352 - SMa1729 0.65 +1.0 976,352 - SMa1729 0.65 +2.2 976,352 - SMa1729 0.65 +0.8 976,464 + SMa1729 0.76 +1.0 976,464 + SMa1729 0.76 +0.5 976,464 + SMa1729 0.76 +0.4 976,465 - SMa1729 0.76 -0.3 976,778 + +0.2 976,843 - -0.1 976,901 + -0.3 976,938 + +0.1 976,940 + -0.0 977,027 + +0.6 977,028 - +0.1 977,028 - +0.5 977,073 + SMa1731 0.12 +0.1 977,074 - SMa1731 0.12 -1.5 977,102 - SMa1731 0.14 -0.0 977,227 - SMa1731 0.22 -0.7 977,297 + SMa1731 0.27 -0.1 977,297 + SMa1731 0.27 +0.4 977,327 + SMa1731 0.29 +1.6 977,328 - SMa1731 0.29 +1.0
Or see this region's nucleotide sequence