Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1677 and SMa1678 are separated by 280 nucleotides SMa1678 and SMa1680 are separated by 263 nucleotides SMa1680 and SMa1682 are separated by 60 nucleotides
SMa1677: SMa1677 - Metallo-dependent hydrolase, at 941,157 to 942,590
SMa1677
SMa1678: SMa1678 - hypothetical protein, at 942,871 to 943,152
SMa1678
SMa1680: SMa1680 - hypothetical protein, at 943,416 to 945,809
SMa1680
SMa1682: SMa1682 - nonspecific acid phosphatase precursor, at 945,870 to 946,883
SMa1682
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 942.693 kb on + strand at 942.792 kb on + strand at 942.793 kb on - strand at 942.801 kb on + strand at 942.801 kb on + strand at 942.802 kb on - strand at 942.802 kb on - strand at 942.819 kb on + strand at 942.855 kb on + strand at 942.860 kb on + strand at 942.860 kb on + strand at 942.861 kb on - strand at 942.861 kb on - strand at 942.862 kb on + strand at 942.864 kb on + strand at 942.864 kb on + strand at 942.865 kb on - strand at 942.865 kb on - strand at 942.872 kb on + strand at 943.353 kb on + strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.417 kb on + strand at 943.443 kb on + strand at 943.525 kb on + strand at 943.810 kb on + strand, within SMa1680 at 943.953 kb on + strand, within SMa1680 at 943.953 kb on + strand, within SMa1680 at 943.963 kb on + strand, within SMa1680 at 943.963 kb on + strand, within SMa1680 at 944.005 kb on + strand, within SMa1680 at 944.561 kb on - strand, within SMa1680 at 944.706 kb on + strand, within SMa1680 at 944.707 kb on - strand, within SMa1680 at 944.785 kb on + strand, within SMa1680 at 944.845 kb on + strand, within SMa1680 at 945.082 kb on + strand, within SMa1680 at 945.082 kb on + strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.093 kb on - strand, within SMa1680 at 945.094 kb on + strand, within SMa1680 at 945.094 kb on + strand, within SMa1680 at 945.300 kb on + strand, within SMa1680 at 945.300 kb on + strand, within SMa1680 at 945.301 kb on - strand, within SMa1680 at 945.305 kb on - strand, within SMa1680 at 945.305 kb on - strand, within SMa1680 at 945.332 kb on + strand, within SMa1680 at 945.333 kb on - strand, within SMa1680 at 945.333 kb on - strand, within SMa1680 at 945.334 kb on + strand, within SMa1680 at 945.660 kb on + strand at 945.660 kb on + strand at 945.661 kb on - strand at 945.816 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.872 kb on - strand at 945.986 kb on - strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.121 kb on + strand, within SMa1682 at 946.122 kb on - strand, within SMa1682 at 946.239 kb on + strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.388 kb on - strand, within SMa1682 at 946.492 kb on - strand, within SMa1682 at 946.628 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.631 kb on - strand, within SMa1682 at 946.631 kb on - strand, within SMa1682 at 946.631 kb on - strand, within SMa1682
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 942,693 + -0.6 942,792 + +0.4 942,793 - -1.0 942,801 + +0.8 942,801 + -0.3 942,802 - -0.2 942,802 - +0.3 942,819 + -2.1 942,855 + +1.6 942,860 + +0.1 942,860 + +1.6 942,861 - -2.5 942,861 - -0.9 942,862 + +1.5 942,864 + +1.6 942,864 + +0.0 942,865 - -0.0 942,865 - +0.2 942,872 + -0.3 943,353 + -2.4 943,354 - +0.2 943,354 - -0.6 943,417 + -0.8 943,443 + +0.1 943,525 + -0.8 943,810 + SMa1680 0.16 +0.1 943,953 + SMa1680 0.22 -0.1 943,953 + SMa1680 0.22 -2.8 943,963 + SMa1680 0.23 -1.0 943,963 + SMa1680 0.23 +0.2 944,005 + SMa1680 0.25 -1.9 944,561 - SMa1680 0.48 +2.4 944,706 + SMa1680 0.54 -1.2 944,707 - SMa1680 0.54 -0.2 944,785 + SMa1680 0.57 -1.0 944,845 + SMa1680 0.60 -0.1 945,082 + SMa1680 0.70 +0.5 945,082 + SMa1680 0.70 +0.0 945,083 - SMa1680 0.70 -0.3 945,083 - SMa1680 0.70 -0.5 945,083 - SMa1680 0.70 -1.9 945,083 - SMa1680 0.70 +0.5 945,093 - SMa1680 0.70 -1.2 945,094 + SMa1680 0.70 -0.4 945,094 + SMa1680 0.70 -1.5 945,300 + SMa1680 0.79 +1.4 945,300 + SMa1680 0.79 +1.0 945,301 - SMa1680 0.79 -2.5 945,305 - SMa1680 0.79 +0.4 945,305 - SMa1680 0.79 -0.7 945,332 + SMa1680 0.80 -0.7 945,333 - SMa1680 0.80 +1.0 945,333 - SMa1680 0.80 +0.3 945,334 + SMa1680 0.80 +0.1 945,660 + -2.1 945,660 + -0.9 945,661 - -0.8 945,816 + +0.6 945,871 + +1.5 945,871 + +0.2 945,872 - -1.0 945,986 - SMa1682 0.11 -1.0 946,020 + SMa1682 0.15 +1.1 946,020 + SMa1682 0.15 -2.3 946,020 + SMa1682 0.15 +1.6 946,021 - SMa1682 0.15 -0.7 946,021 - SMa1682 0.15 -0.5 946,021 - SMa1682 0.15 +0.4 946,021 - SMa1682 0.15 +0.3 946,121 + SMa1682 0.25 -1.6 946,122 - SMa1682 0.25 +0.2 946,239 + SMa1682 0.36 +1.0 946,346 - SMa1682 0.47 -0.5 946,346 - SMa1682 0.47 +0.4 946,346 - SMa1682 0.47 -0.2 946,388 - SMa1682 0.51 +0.2 946,492 - SMa1682 0.61 +0.4 946,628 + SMa1682 0.75 -1.5 946,630 + SMa1682 0.75 -2.0 946,630 + SMa1682 0.75 +0.5 946,630 + SMa1682 0.75 -0.8 946,631 - SMa1682 0.75 +0.1 946,631 - SMa1682 0.75 -0.1 946,631 - SMa1682 0.75 -0.6
Or see this region's nucleotide sequence