Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1478 and SMa1480 are separated by 224 nucleotides SMa1480 and SMa1483 are separated by 235 nucleotides
SMa1478: SMa1478 - methyltransferase, at 812,255 to 813,790
SMa1478
SMa1480: SMa1480 - LysR family transcriptional regulator, at 814,015 to 814,902
SMa1480
SMa1483: SMa1483 - dehydrogenase, at 815,138 to 817,558
SMa1483
Position (kb) 814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 813.246 kb on + strand, within SMa1478 at 813.246 kb on + strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.316 kb on + strand, within SMa1478 at 813.664 kb on + strand at 813.696 kb on + strand at 813.697 kb on - strand at 813.850 kb on + strand at 814.039 kb on + strand at 814.039 kb on + strand at 814.040 kb on - strand at 814.107 kb on + strand, within SMa1480 at 814.150 kb on + strand, within SMa1480 at 814.151 kb on - strand, within SMa1480 at 814.261 kb on - strand, within SMa1480 at 814.386 kb on - strand, within SMa1480 at 814.511 kb on + strand, within SMa1480 at 814.512 kb on - strand, within SMa1480 at 814.512 kb on - strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.638 kb on - strand, within SMa1480 at 814.638 kb on - strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.810 kb on + strand, within SMa1480 at 814.811 kb on - strand, within SMa1480 at 814.811 kb on - strand, within SMa1480 at 814.814 kb on - strand at 815.136 kb on - strand at 815.199 kb on - strand at 815.335 kb on + strand at 815.335 kb on + strand at 815.336 kb on - strand at 815.336 kb on - strand at 815.336 kb on - strand at 815.336 kb on - strand at 815.336 kb on - strand at 815.348 kb on + strand at 815.349 kb on - strand at 815.408 kb on + strand, within SMa1483 at 815.558 kb on + strand, within SMa1483 at 815.559 kb on - strand, within SMa1483 at 815.559 kb on - strand, within SMa1483 at 815.606 kb on + strand, within SMa1483 at 815.606 kb on + strand, within SMa1483 at 815.640 kb on + strand, within SMa1483 at 815.641 kb on - strand, within SMa1483 at 815.718 kb on + strand, within SMa1483 at 815.718 kb on + strand, within SMa1483 at 815.718 kb on + strand, within SMa1483 at 815.718 kb on + strand, within SMa1483 at 815.718 kb on + strand, within SMa1483 at 815.719 kb on - strand, within SMa1483 at 815.719 kb on - strand, within SMa1483 at 815.719 kb on - strand, within SMa1483 at 815.817 kb on - strand, within SMa1483 at 815.895 kb on - strand, within SMa1483 at 815.895 kb on - strand at 815.898 kb on - strand, within SMa1483
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 813,246 + SMa1478 0.65 +0.8 813,246 + SMa1478 0.65 +0.4 813,247 - SMa1478 0.65 +0.3 813,247 - SMa1478 0.65 +0.7 813,247 - SMa1478 0.65 -1.4 813,247 - SMa1478 0.65 -0.7 813,247 - SMa1478 0.65 +0.0 813,247 - SMa1478 0.65 +0.1 813,316 + SMa1478 0.69 -0.0 813,664 + +0.7 813,696 + +0.0 813,697 - +0.0 813,850 + +1.2 814,039 + -0.1 814,039 + -0.6 814,040 - +1.3 814,107 + SMa1480 0.10 -1.2 814,150 + SMa1480 0.15 +0.5 814,151 - SMa1480 0.15 -2.0 814,261 - SMa1480 0.28 -0.3 814,386 - SMa1480 0.42 -1.2 814,511 + SMa1480 0.56 -1.7 814,512 - SMa1480 0.56 -0.6 814,512 - SMa1480 0.56 -1.6 814,637 + SMa1480 0.70 +0.3 814,637 + SMa1480 0.70 -0.2 814,637 + SMa1480 0.70 +0.4 814,638 - SMa1480 0.70 +0.4 814,638 - SMa1480 0.70 +0.3 814,750 + SMa1480 0.83 -1.4 814,750 + SMa1480 0.83 +1.1 814,750 + SMa1480 0.83 +0.3 814,751 - SMa1480 0.83 -0.8 814,751 - SMa1480 0.83 -0.8 814,751 - SMa1480 0.83 +0.3 814,751 - SMa1480 0.83 -1.0 814,810 + SMa1480 0.90 +1.1 814,811 - SMa1480 0.90 +0.2 814,811 - SMa1480 0.90 -3.7 814,814 - -0.4 815,136 - -0.3 815,199 - -1.0 815,335 + +0.2 815,335 + -0.6 815,336 - +0.5 815,336 - -0.4 815,336 - -2.5 815,336 - -0.3 815,336 - -0.3 815,348 + +0.8 815,349 - +0.4 815,408 + SMa1483 0.11 +2.3 815,558 + SMa1483 0.17 -0.6 815,559 - SMa1483 0.17 +0.7 815,559 - SMa1483 0.17 +0.5 815,606 + SMa1483 0.19 -0.4 815,606 + SMa1483 0.19 -1.8 815,640 + SMa1483 0.21 +0.8 815,641 - SMa1483 0.21 -0.1 815,718 + SMa1483 0.24 -0.7 815,718 + SMa1483 0.24 +0.9 815,718 + SMa1483 0.24 -0.5 815,718 + SMa1483 0.24 +1.3 815,718 + SMa1483 0.24 -0.2 815,719 - SMa1483 0.24 -0.1 815,719 - SMa1483 0.24 +0.1 815,719 - SMa1483 0.24 -1.0 815,817 - SMa1483 0.28 +1.1 815,895 - SMa1483 0.31 +1.7 815,895 - -0.8 815,898 - SMa1483 0.31 -1.2
Or see this region's nucleotide sequence