Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1445 and SMa1447 are separated by 170 nucleotides SMa1447 and SMa1450 are separated by 488 nucleotides
SMa1445: SMa1445 - hypothetical protein, at 796,350 to 797,222
SMa1445
SMa1447: SMa1447 - Permease, MFS, at 797,393 to 798,706
SMa1447
SMa1450: SMa1450 - thiolase, at 799,195 to 800,385
SMa1450
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 796.396 kb on + strand at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.658 kb on - strand, within SMa1445 at 796.689 kb on + strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.935 kb on + strand, within SMa1445 at 797.134 kb on + strand, within SMa1445 at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.145 kb on + strand at 797.146 kb on - strand at 797.146 kb on - strand at 797.147 kb on + strand at 797.148 kb on - strand at 797.209 kb on + strand at 797.551 kb on + strand, within SMa1447 at 797.596 kb on - strand, within SMa1447 at 797.610 kb on + strand, within SMa1447 at 797.616 kb on + strand, within SMa1447 at 797.738 kb on + strand, within SMa1447 at 797.775 kb on + strand, within SMa1447 at 797.775 kb on + strand, within SMa1447 at 797.899 kb on - strand, within SMa1447 at 798.097 kb on - strand, within SMa1447 at 798.171 kb on + strand, within SMa1447 at 798.315 kb on + strand, within SMa1447 at 798.689 kb on + strand at 799.084 kb on + strand at 799.084 kb on + strand at 799.084 kb on + strand at 799.084 kb on + strand at 799.085 kb on - strand at 799.085 kb on - strand at 799.088 kb on + strand at 799.088 kb on + strand at 799.088 kb on + strand at 799.088 kb on + strand at 799.089 kb on - strand at 799.089 kb on - strand at 799.092 kb on + strand at 799.092 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.097 kb on - strand at 799.097 kb on - strand at 799.097 kb on - strand at 799.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 796,396 + -0.9 796,489 + SMa1445 0.16 +1.3 796,489 + SMa1445 0.16 -0.3 796,489 + SMa1445 0.16 +0.2 796,490 - SMa1445 0.16 +0.0 796,490 - SMa1445 0.16 +0.4 796,490 - SMa1445 0.16 -0.0 796,490 - SMa1445 0.16 +0.4 796,658 - SMa1445 0.35 +0.3 796,689 + SMa1445 0.39 +1.2 796,835 - SMa1445 0.56 +0.7 796,835 - SMa1445 0.56 -0.7 796,935 + SMa1445 0.67 +1.7 797,134 + SMa1445 0.90 -0.8 797,145 + +1.4 797,145 + +0.0 797,145 + +0.3 797,145 + +0.0 797,145 + -0.9 797,145 + +0.7 797,145 + -0.4 797,145 + -1.1 797,146 - +0.2 797,146 - +0.4 797,147 + -0.9 797,148 - +0.1 797,209 + -1.8 797,551 + SMa1447 0.12 -0.0 797,596 - SMa1447 0.15 +0.2 797,610 + SMa1447 0.17 -1.4 797,616 + SMa1447 0.17 +2.9 797,738 + SMa1447 0.26 -0.3 797,775 + SMa1447 0.29 -1.0 797,775 + SMa1447 0.29 -0.7 797,899 - SMa1447 0.39 -0.6 798,097 - SMa1447 0.54 -2.9 798,171 + SMa1447 0.59 -0.4 798,315 + SMa1447 0.70 -0.7 798,689 + -0.1 799,084 + +0.3 799,084 + -0.4 799,084 + -1.6 799,084 + +0.2 799,085 - -1.0 799,085 - +2.1 799,088 + -1.8 799,088 + +0.7 799,088 + -0.0 799,088 + +0.3 799,089 - +1.4 799,089 - +2.1 799,092 + +0.2 799,092 + -0.3 799,096 + +0.9 799,096 + +0.1 799,096 + -2.4 799,097 - +0.2 799,097 - +0.0 799,097 - -0.1 799,205 - +0.4
Or see this region's nucleotide sequence