Strain Fitness in Sinorhizobium meliloti 1021 around SMa1398

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1397 and SMa1398 are separated by 8 nucleotidesSMa1398 and SMa1400 overlap by 4 nucleotides SMa1397: SMa1397 - hypothetical protein, at 767,799 to 768,947 SMa1397 SMa1398: SMa1398 - 3-ketoacyl-ACP reductase, at 768,956 to 769,735 SMa1398 SMa1400: SMa1400 - acyl-CoA dehydrogenase, at 769,732 to 770,874 SMa1400 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1 2 3at 767.995 kb on + strand, within SMa1397at 767.995 kb on + strand, within SMa1397at 767.996 kb on - strand, within SMa1397at 768.068 kb on + strand, within SMa1397at 768.068 kb on + strand, within SMa1397at 768.185 kb on - strand, within SMa1397at 768.205 kb on + strand, within SMa1397at 768.206 kb on - strand, within SMa1397at 768.206 kb on - strand, within SMa1397at 768.239 kb on + strand, within SMa1397at 768.276 kb on + strand, within SMa1397at 768.439 kb on + strand, within SMa1397at 768.451 kb on + strand, within SMa1397at 768.547 kb on + strand, within SMa1397at 768.548 kb on - strand, within SMa1397at 768.905 kb on - strandat 768.905 kb on - strandat 769.113 kb on + strand, within SMa1398at 769.249 kb on - strand, within SMa1398at 769.249 kb on - strand, within SMa1398at 769.829 kb on + strandat 770.485 kb on + strand, within SMa1400at 770.520 kb on - strand, within SMa1400at 770.676 kb on - strand, within SMa1400at 770.676 kb on - strand, within SMa1400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
767,995 + SMa1397 0.17 -0.9
767,995 + SMa1397 0.17 +0.1
767,996 - SMa1397 0.17 -0.4
768,068 + SMa1397 0.23 -1.4
768,068 + SMa1397 0.23 +3.1
768,185 - SMa1397 0.34 +0.0
768,205 + SMa1397 0.35 -0.1
768,206 - SMa1397 0.35 -0.6
768,206 - SMa1397 0.35 -1.0
768,239 + SMa1397 0.38 -0.4
768,276 + SMa1397 0.42 +0.3
768,439 + SMa1397 0.56 +1.6
768,451 + SMa1397 0.57 +0.5
768,547 + SMa1397 0.65 +0.8
768,548 - SMa1397 0.65 +0.9
768,905 - -0.5
768,905 - -1.3
769,113 + SMa1398 0.20 -1.6
769,249 - SMa1398 0.38 +0.4
769,249 - SMa1398 0.38 +0.2
769,829 + +1.4
770,485 + SMa1400 0.66 -0.8
770,520 - SMa1400 0.69 +1.3
770,676 - SMa1400 0.83 +0.1
770,676 - SMa1400 0.83 -0.1

Or see this region's nucleotide sequence