Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1381 and SMa5031 overlap by 14 nucleotides SMa5031 and SMa1386 overlap by 4 nucleotides SMa1386 and SMa1387 are separated by 351 nucleotides
SMa1381: SMa1381 - oxidase, at 761,267 to 762,625
SMa1381
SMa5031: SMa5031 - hypothetical protein, at 762,612 to 762,869
SMa5031
SMa1386: SMa1386 - oxidoreductase, at 762,866 to 763,846
SMa1386
SMa1387: SMa1387 - LysR family transcriptional regulator, at 764,198 to 765,112
SMa1387
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 761.927 kb on - strand, within SMa1381 at 762.308 kb on + strand, within SMa1381 at 762.308 kb on + strand, within SMa1381 at 762.443 kb on - strand, within SMa1381 at 762.443 kb on - strand, within SMa1381 at 762.655 kb on + strand, within SMa5031 at 762.736 kb on + strand, within SMa5031 at 763.064 kb on + strand, within SMa1386 at 763.251 kb on + strand, within SMa1386 at 763.251 kb on + strand, within SMa1386 at 763.296 kb on + strand, within SMa1386 at 763.296 kb on + strand, within SMa1386 at 763.297 kb on - strand, within SMa1386 at 763.400 kb on + strand, within SMa1386 at 763.401 kb on - strand, within SMa1386 at 763.402 kb on + strand, within SMa1386 at 763.403 kb on - strand, within SMa1386 at 763.571 kb on + strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.572 kb on - strand, within SMa1386 at 763.578 kb on + strand, within SMa1386 at 763.661 kb on - strand, within SMa1386 at 764.181 kb on + strand at 764.261 kb on + strand at 764.262 kb on - strand at 764.285 kb on + strand at 764.285 kb on + strand at 764.286 kb on - strand at 764.655 kb on + strand, within SMa1387 at 764.655 kb on + strand, within SMa1387 at 764.655 kb on + strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.656 kb on - strand, within SMa1387 at 764.715 kb on - strand, within SMa1387 at 764.732 kb on + strand, within SMa1387 at 764.770 kb on + strand, within SMa1387 at 764.770 kb on + strand, within SMa1387 at 764.771 kb on - strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.823 kb on + strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.824 kb on - strand, within SMa1387 at 764.826 kb on + strand, within SMa1387 at 764.827 kb on - strand, within SMa1387
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 761,927 - SMa1381 0.49 +0.4 762,308 + SMa1381 0.77 +0.5 762,308 + SMa1381 0.77 -0.4 762,443 - SMa1381 0.87 +0.1 762,443 - SMa1381 0.87 +0.1 762,655 + SMa5031 0.17 -0.3 762,736 + SMa5031 0.48 +0.3 763,064 + SMa1386 0.20 +1.2 763,251 + SMa1386 0.39 +0.1 763,251 + SMa1386 0.39 +1.4 763,296 + SMa1386 0.44 +0.4 763,296 + SMa1386 0.44 -1.1 763,297 - SMa1386 0.44 -0.7 763,400 + SMa1386 0.54 +2.3 763,401 - SMa1386 0.55 +0.2 763,402 + SMa1386 0.55 +0.8 763,403 - SMa1386 0.55 -0.2 763,571 + SMa1386 0.72 -0.1 763,572 - SMa1386 0.72 -1.2 763,572 - SMa1386 0.72 -0.3 763,572 - SMa1386 0.72 -0.4 763,572 - SMa1386 0.72 -0.5 763,578 + SMa1386 0.73 +1.3 763,661 - SMa1386 0.81 +0.2 764,181 + -0.3 764,261 + +0.4 764,262 - +0.2 764,285 + -0.8 764,285 + +0.1 764,286 - -0.1 764,655 + SMa1387 0.50 -0.2 764,655 + SMa1387 0.50 -0.4 764,655 + SMa1387 0.50 -1.2 764,656 - SMa1387 0.50 +2.7 764,656 - SMa1387 0.50 +1.9 764,656 - SMa1387 0.50 -0.0 764,715 - SMa1387 0.57 +0.5 764,732 + SMa1387 0.58 +0.3 764,770 + SMa1387 0.63 -2.8 764,770 + SMa1387 0.63 +0.1 764,771 - SMa1387 0.63 -0.1 764,823 + SMa1387 0.68 -0.1 764,823 + SMa1387 0.68 +0.3 764,823 + SMa1387 0.68 -0.1 764,823 + SMa1387 0.68 +1.0 764,824 - SMa1387 0.68 -1.6 764,824 - SMa1387 0.68 +0.5 764,824 - SMa1387 0.68 -2.0 764,824 - SMa1387 0.68 -0.2 764,824 - SMa1387 0.68 +1.2 764,824 - SMa1387 0.68 +0.5 764,826 + SMa1387 0.69 -0.1 764,827 - SMa1387 0.69 +1.5
Or see this region's nucleotide sequence