Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1266 and SMa1269 are separated by 79 nucleotides SMa1269 and SMa1272 are separated by 4 nucleotides SMa1272 and SMa1273 are separated by 59 nucleotides
SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828
SMa1266
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
Position (kb) 693
694
695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 693.098 kb on - strand at 693.098 kb on - strand, within SMa1266 at 693.098 kb on - strand at 693.188 kb on - strand, within SMa1266 at 693.401 kb on - strand, within SMa1266 at 693.469 kb on + strand, within SMa1266 at 693.512 kb on + strand, within SMa1266 at 693.512 kb on + strand, within SMa1266 at 693.512 kb on + strand, within SMa1266 at 693.513 kb on - strand, within SMa1266 at 693.565 kb on - strand, within SMa1266 at 693.685 kb on - strand, within SMa1266 at 693.685 kb on - strand, within SMa1266 at 693.685 kb on - strand, within SMa1266 at 693.685 kb on - strand, within SMa1266 at 693.728 kb on + strand at 693.729 kb on - strand at 693.729 kb on - strand at 693.787 kb on + strand at 693.787 kb on + strand at 693.788 kb on - strand at 693.813 kb on + strand at 693.814 kb on - strand at 693.814 kb on - strand at 693.814 kb on - strand at 693.866 kb on + strand at 693.867 kb on - strand at 693.910 kb on - strand at 693.914 kb on + strand at 693.914 kb on + strand at 693.915 kb on - strand at 693.915 kb on - strand at 693.917 kb on + strand at 693.996 kb on - strand at 694.113 kb on + strand, within SMa1269 at 694.114 kb on - strand, within SMa1269 at 694.227 kb on + strand, within SMa1269 at 694.231 kb on - strand, within SMa1269 at 694.455 kb on - strand, within SMa1269 at 694.743 kb on + strand, within SMa1269 at 694.743 kb on + strand, within SMa1269 at 694.744 kb on - strand, within SMa1269 at 694.744 kb on - strand, within SMa1269 at 695.065 kb on + strand, within SMa1269 at 695.066 kb on - strand, within SMa1269 at 695.243 kb on + strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.244 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.347 kb on - strand, within SMa1269 at 695.741 kb on - strand at 695.805 kb on + strand at 695.806 kb on - strand at 695.810 kb on - strand at 695.945 kb on - strand, within SMa1272 at 695.945 kb on - strand, within SMa1272 at 696.000 kb on + strand, within SMa1272 at 696.310 kb on + strand, within SMa1272 at 696.464 kb on + strand, within SMa1272 at 696.574 kb on + strand at 696.626 kb on + strand at 696.632 kb on - strand at 696.725 kb on - strand at 696.779 kb on + strand at 696.779 kb on + strand at 696.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 693,098 - +3.4 693,098 - SMa1266 0.46 -0.2 693,098 - +0.2 693,188 - SMa1266 0.53 +0.4 693,401 - SMa1266 0.68 +0.3 693,469 + SMa1266 0.73 -0.6 693,512 + SMa1266 0.77 +0.2 693,512 + SMa1266 0.77 +1.5 693,512 + SMa1266 0.77 -1.6 693,513 - SMa1266 0.77 -1.1 693,565 - SMa1266 0.80 +0.1 693,685 - SMa1266 0.89 -3.9 693,685 - SMa1266 0.89 -2.5 693,685 - SMa1266 0.89 +0.1 693,685 - SMa1266 0.89 +0.2 693,728 + -1.4 693,729 - -0.3 693,729 - +0.1 693,787 + -3.0 693,787 + -0.4 693,788 - -1.6 693,813 + +0.4 693,814 - +0.3 693,814 - -0.2 693,814 - -1.4 693,866 + +1.5 693,867 - +0.3 693,910 - -0.1 693,914 + -0.0 693,914 + -0.3 693,915 - +0.0 693,915 - +0.3 693,917 + -0.7 693,996 - -0.1 694,113 + SMa1269 0.11 -0.8 694,114 - SMa1269 0.11 -0.6 694,227 + SMa1269 0.17 +0.1 694,231 - SMa1269 0.17 -0.7 694,455 - SMa1269 0.29 +0.4 694,743 + SMa1269 0.44 -0.3 694,743 + SMa1269 0.44 +0.1 694,744 - SMa1269 0.44 -0.1 694,744 - SMa1269 0.44 -0.2 695,065 + SMa1269 0.61 -0.2 695,066 - SMa1269 0.61 -0.6 695,243 + SMa1269 0.70 -0.4 695,244 - SMa1269 0.70 -0.7 695,244 - SMa1269 0.70 -0.5 695,244 - SMa1269 0.70 -0.7 695,347 - SMa1269 0.76 +0.2 695,347 - SMa1269 0.76 +0.9 695,741 - +0.7 695,805 + +0.8 695,806 - +1.2 695,810 - -1.0 695,945 - SMa1272 0.17 +0.9 695,945 - SMa1272 0.17 -0.7 696,000 + SMa1272 0.23 +0.1 696,310 + SMa1272 0.61 +0.4 696,464 + SMa1272 0.80 +0.5 696,574 + -1.5 696,626 + +0.2 696,632 - -0.4 696,725 - +0.0 696,779 + -0.3 696,779 + -0.4 696,780 - -0.2
Or see this region's nucleotide sequence